Ciona intestinalis (yellow sea squirt): 100184186
Help
Entry
100184186 CDS
T01056
Name
(RefSeq) GRB10-interacting GYF protein 2 isoform X2
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100184186
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
100184186
Surveillance factors
Other surveillance factors
100184186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GYF
GYF_2
Motif
Other DBs
NCBI-GeneID:
100184186
NCBI-ProteinID:
XP_002119518
LinkDB
All DBs
Position
7:594077..611014
Genome browser
AA seq
1278 aa
AA seq
DB search
MSAETLNFGPQWLRDLSSGGSNVTSPPPSPATQPLIKFKLAQHRYGREEMLALFEKHDNV
PSELFRAPNLISEETLTPLALIPLTEDDQRAFSGGVNSDVMHRSRGPGGPLALGRGRSMP
PRGRGRGRGEMFSRSMSQSEDGPSYGRGSREYIRRDSWDDRGFNRNGRSFEDTAPRKPVR
RSDASDDWRNDAIRGSGDGNENDKEGGSDWRPPAPRKEGWREPGRGSWREREDRGWSNDT
FHRDRRPVNRTRSYGSNKYDSEAGLMPEWADDADESEVGVFDPSGAFQAQKKGGKRGDPK
LPRDSDRGIRRNASSFGSLKKIEEKERSRSEREEIGRGGAGSKTPEEKPETKENGKPYGS
SGSTPTTPNNQPVLKDHEKHEPTSPEKSPIKEKPAEPEKRPDLVEREVPSPNKSVESLEE
TKMPNKTMEETRGKQTEEEVDHLSHHEMNALKLIDSLTDFDEQPQVEETPTPTRLPPALD
PLSLIQGNVTPNVPDLAMKWFYKDPQGETQGPFSSQEMGEWFMAGYFTSNLLVKRACDPQ
FVPLGDLITRCGAVPFGPQSVPQTTSSDVIKAQKQAELLKQQQQQMQLQLHLQKQQQLQQ
QLQQQQQQQYQQQQQQLLQQQKQQQILREFQQKQQQQQQQQQQQQAVYATIVSKLSASEE
FLSMSAQQQQATVAQYMAFMQQSSSGDVPTTTQSIWDSDTSALRRPSPVSMVTSQQQQQL
VDILKQQEQAAVKKKQQEEEEEKLKREKEELQRIKAQEEAHRLHMEELHKQKVMEELRQA
EIRRVQEEEDQMRREQEERRLKEEQRRKEEEAKARIAIAKLQEEEEQRKKEEEMLQRREE
EEIRKAMEEEKRKKQAQEEQEKRIHHLKMVEEEKRKRIQEEKAQEEALKKQKELEAQRLK
EEAIRKRQQEQLKNIKLPTTANWAEQQQQRQQQQQQLSVSEIQKLQEKKEHERQLQEQQM
RVISQKQQAQQQQRGVWGGTAPVFQAPTTPSNTTMSLMEIQMEEARNQQRGQAKQPQPKP
DLSLQASVAWGGRSNSAATSVWGNQTFQPPPTQPSYWDQVAKANNPKPVKQNNTKPQFQT
SYKQKAKANNTNNENHNVLALFKQTEAQTDPFVSWCDTEIKKLPSAVNLDIPTFVAFLRD
VESPHEVKDYVASYLGESKPARDFAEAFLQQRLTLKKQQKLEEQKQQEKQKQQQQAKKQQ
QGQKQVRGAQQVNKTQQQQTKQQQQQTAADQEFVTGTTKRGKRKQKKLQKVDPSILGFSV
NAASDRVNMGEIETPKDS
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgtccgctgaaactctaaactttggtccacaatggcttcgagatctttctagtggtggc
tctaatgtaacaagcccacccccttccccagccacacaacctctaatcaagttcaaactt
gctcagcataggtatggccgggaagaaatgcttgctctatttgaaaaacacgataacgtt
ccttctgaactatttcgtgcaccaaaccttatcagtgaagaaacacttactcctcttgct
cttataccattaactgaagatgatcaacgtgccttttctgggggagtaaacagtgacgta
atgcatcgaagtcggggtcctggtggtcctcttgccttgggccgtggccgctcaatgccc
ccacgtgggcggggcagggggcgtggggaaatgttttcccgaagtatgagtcaaagtgag
gatggtccttcttatgggcgaggatcaagagaatacattagaagggacagttgggatgac
agagggttcaatagaaatggtcgatcgtttgaggacacggctcctcggaaaccggttcgt
cggtctgatgcgagtgatgattggaggaatgatgcgatccgtggaagtggagatggaaat
gagaatgataaagagggaggatcggactggagacctcctgctccgaggaaagaaggttgg
agagaacctggtcgaggcagctggagggagagggaagacagaggttggtctaatgatacg
tttcatcgagataggaggcctgtgaacagaaccaggtcttatggaagcaataaatatgat
agtgaagctggtttgatgccagagtgggcggatgatgcagatgaaagtgaagttggtgta
tttgatccttctggtgcatttcaagcacagaaaaaagggggtaaacgcggggatcctaaa
ttaccgagggactctgatcgtgggataaggagaaacgcttcctcttttggctcactgaag
aaaatagaagagaaagaaaggagcaggagtgagagggaagaaatagggagaggaggagct
ggttcgaaaacaccagaggaaaaaccagaaaccaaagaaaatggcaaaccatatggttcc
agtggatcaactcctaccaccccaaacaaccaacctgttttaaaagatcatgaaaaacat
gaaccaacttcaccagaaaagtcaccaattaaagagaaaccagcagaaccagaaaaaaga
ccagatctggttgaaagagaagtcccttcacctaataaaagtgttgaaagtttggaagaa
accaaaatgccgaataaaaccatggaagaaaccagaggaaaacagacagaagaagaggtg
gaccatttgagtcatcatgaaatgaacgctcttaagttaattgattcactcactgacttt
gatgagcaaccccaggttgaagaaacccccacaccaacacgcttacccccggcccttgac
cccctatccctaatccagggtaatgtgacccctaatgtgccagacctagctatgaagtgg
ttctataaagacccccaaggggaaacgcaaggtccgttcagttcacaggagatgggtgaa
tggttcatggcaggttacttcacttctaatcttcttgttaagcgagcgtgtgatcctcag
tttgtaccactaggtgacctcattacaaggtgtggggctgttccttttggcccacaatca
gtaccacagaccaccagctctgatgtaataaaagcacagaaacaagctgagctgttaaaa
caacaacaacaacaaatgcagcttcaattgcatctgcagaaacaacaacaattacaacaa
caacttcaacaacagcagcaacaacaatatcaacagcaacaacaacagctcttacaacaa
caaaaacaacaacaaatcctgcgagaatttcaacaaaaacaacaacaacaacagcaacag
cagcagcaacaacaagcagtgtatgcgaccatcgtatctaagctcagtgcttcagaggag
tttttatcaatgtctgctcaacaacagcaagccacagttgctcaatacatggctttcatg
cagcaatcatcctcaggagatgtacccaccactactcagtctatatgggactctgatact
tctgctttacgccggccctcacctgtttctatggtcacctcacaacaacagcaacaatta
gtcgatattcttaaacaacaggagcaagctgcagtaaagaagaaacaacaagaagaggag
gaggagaaattaaaaagagagaaagaagagctgcaaagaataaaggcacaagaagaagca
cacagattacacatggaggaattacataagcaaaaagtgatggaagaattaagacaggca
gagatccggagagttcaagaagaagaagatcagatgcgtagagagcaggaggaaaggagg
ttgaaagaggagcagaggagaaaagaagaggaggccaaagctcggatagcaattgctaag
ttacaagaagaggaagagcaaagaaaaaaagaagaagaaatgttgcaaaggagagaagag
gaggagattcgaaaggcaatggaggaggagaaaagaaagaaacaggcacaggaggagcaa
gagaagaggatccatcatcttaaaatggtggaagaagagaagaggaagagaatacaagag
gaaaaagcacaagaagaagcattgaagaagcagaaagagttagaagcccagagactcaaa
gaagaagcaataagaaagcgccaacaagaacaactgaaaaacatcaaactaccaacaaca
gcaaactgggccgaacaacaacaacaacgtcagcaacaacaacaacaactatcagtgtcg
gaaatacaaaagctacaagagaaaaaagaacatgagaggcaactacaagaacaacagatg
cgagtcatttctcaaaagcagcaagcccaacaacagcagcgtggtgtgtggggtggaaca
gccccagtattccaagcccccaccaccccatccaacaccacaatgtccttgatggaaata
caaatggaagaagcacgcaaccaacaaagaggacaagccaaacaaccacaaccgaaacca
gatttaagcttacaagcttcagtggcgtggggtggccgaagtaattctgctgcaaccagt
gtatgggggaaccaaacctttcaaccaccaccaactcaaccatcgtactgggaccaagtt
gcaaaagcaaataacccaaaaccagtgaagcaaaacaacaccaaaccacaatttcagacc
agttataaacagaaagcaaaggcaaacaacactaacaatgagaaccataatgtgcttgcc
ttgttcaaacaaactgaggcacaaaccgatccatttgtctcctggtgcgacacagaaatc
aaaaagcttccttcagcagtaaaccttgacatccctacgttcgttgcgttcttgcgtgac
gtggagtcgccacacgaggtaaaagactatgtggcgtcttaccttggagagtcaaaacct
gcacgagacttcgcagaagcttttcttcagcaacgactcacgcttaagaaacaacagaaa
cttgaagaacaaaaacaacaagaaaaacaaaagcaacaacaacaagcgaaaaaacaacag
caagggcaaaaacaagtaagaggtgcacaacaagtaaataaaacacaacaacagcaaaca
aaacaacaacaacagcaaacagccgcggatcaagagtttgtaactggcaccacaaagaga
ggaaaacgaaagcagaagaagttgcaaaaagttgatccaagtatcttaggattttcggtc
aacgcggcttcggacagagtgaacatgggtgagatcgaaactcccaaagacagctga
DBGET
integrated database retrieval system
