Ciona intestinalis (yellow sea squirt): 100184347
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Entry
100184347 CDS
T01056
Name
(RefSeq) uncharacterized protein LOC100184347
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100184347
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
100184347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
DUF7462
Motif
Other DBs
NCBI-GeneID:
100184347
NCBI-ProteinID:
XP_018671119
LinkDB
All DBs
Position
1:complement(2162727..2169802)
Genome browser
AA seq
1039 aa
AA seq
DB search
MEPTSRKEFYEYCYPDTCKLAPSSLEQIFNGYGALEAVDVEYIENLSKFCVQAKKQRPLL
VDQHNKDLSWILAPSTPVQPLGNPDPINHDINPPVQILSLYKDRLTQNEGESEKQIKPEY
NFKQQFQNFNLDHSDIAKPTYDRLIANADDVCLRKTNRVGKGKTLDFDPSTLDIPASLLK
ELLEEEIREDTKKVIFDESYTGGALSVLPLPSSRFHENGILIHPSSTFDGISLKLFSLPT
SYHNQYMETNSIIEPQIIPGAIHKIPLDGCALQTDCVHGHNYKPQYFGVRTYHDVLVASI
GDDCVVFDDDENFSSLQFSDTEKIQTVGKLHSELLLSNFSMSPHIEGEAMVATYDQRMFL
WDVSQHSDVLIDSKTASNPQLEEIHLSRNTPSSWMQVDFAAHPRQIYLAGRKCLNLLDMR
GQSTSSRLLYTPCHDKLPDEMIMCIMSASKFNRSPATSYNEFQCFVATQNHLLIIDQRFC
KEPVLKWSLNMRYPCHHMAATTLPSQSGTDTHLHHMLLTANQNAQELHCYQYHSQFGVTK
QVTNTRRSNNIVQRPPISVSLPRALDTIKDIRRYLCSYTIPKHRDRIIRRLQQPVIGSSA
FSYKLSNGIPGVAVFQVNLYGDITYQLLTLSDPQLVYDNQNIVSGQFTQFSGINKQSSEL
AIGQIYQTWAEAAQKSIDEIKEPKPANSKIVSQKIDASVFSAYQSLLPNSKCIVCKNTVI
RTGSKKVIDDLRLLSSKKINLNRDTTHDHDTDDSDSQDDVEWQSGQTISPKSRTPTFDSN
THCLRCRANLKTSEMLLNAHTSGKVKWIPEEDDPFEYEEQSLDEDFEDLDLIDTSCAKSG
VGKILVETWDGSYQDMWDSMNHERMMEEKAAEAERLKEIFDLSEGPKTPQDCGNVKAAQE
VNNENTSVWESDNNNVIKKGKNYASSDLFGEMALNASASKNQNKSKEKMNLSFKRTFSET
DFSNSVDLSQSRNNQNTTSTPELQSKVTSLDKNVQKFSLFSSLKFFPPKNLSSSFNEPKK
SKSNSQVKRKSFTPTVGFL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggaacctacaagtagaaaagagttttatgaatattgctatcctgacacttgtaaactt
gccccaagcagcctggaacaaatattcaatgggtatggagccttggaagcagtagatgtt
gaatacattgaaaacttgtcaaaattttgtgttcaagcgaaaaagcaaagacctcttttg
gtagatcagcacaacaaagatctaagctggatcctcgcaccaagtaccccagttcagcca
cttggcaatccggatccaatcaatcatgatataaacccacctgttcaaatacttagcttg
tataaggacaggttaacacagaatgaaggagaatctgaaaaacaaataaaaccagaatat
aactttaaacaacagttccaaaacttcaaccttgaccattcggatattgcaaaaccaact
tatgacaggttgatagcaaatgctgatgacgtttgtttaagaaaaacgaatagggttggc
aaggggaagactttagattttgacccttctacacttgacattcctgcatcactcctcaaa
gagcttcttgaagaagagatccgggaggacaccaagaaagtgatctttgatgaatcctac
acgggaggtgctctttcagtgcttcctcttccttccagtcgttttcatgagaatggaatt
ctaattcatccatcttcaacatttgatggaataagccttaagttattttcgctccctaca
agctaccataaccagtatatggaaaccaattcaattattgagcctcaaattatccctgga
gctatacacaaaattcctttggacggttgtgcattacaaactgattgcgtccatggacat
aattacaaaccacaatactttggtgtgaggacgtatcatgatgtattggtagcttccata
ggagatgattgtgttgtttttgatgatgacgaaaatttcagctcacttcagttttctgac
actgaaaaaatccagacagttggcaaacttcacagtgagttactcttatctaacttttcc
atgagtccccacatagaaggtgaagcgatggttgctacttacgaccagcgcatgtttttg
tgggacgtttctcaacattctgatgtactgattgattccaagacggcttcaaatccacaa
cttgaagagatacatctatcacgtaacacaccaagtagttggatgcaagttgatttcgct
gcccacccacgccaaatttatttagctggtagaaaatgtttaaatttgcttgacatgaga
gggcaatctactagttcaaggttgctgtacacaccatgtcatgataaacttcctgatgag
atgataatgtgtataatgagtgcttcaaaattcaaccggtcacccgccacttcatataac
gagtttcaatgcttcgtagcaacacagaatcatcttttaataattgatcaaagattttgt
aaagaacccgtgctcaaatggtcgctaaacatgagatacccatgccaccatatggctgcc
actaccttaccatctcaatcaggcactgacacccatttacatcacatgctgcttactgcc
aaccaaaatgcacaagaactacattgctatcaataccattcccaatttggagttaccaaa
caagttacaaacactagacgatcaaataatattgtacagcgcccgcctatatctgtgtct
ctacccagagcattggatactataaaagacatacgtagatacctttgttcatatactata
ccaaagcatagggatcgtataataagaagacttcagcaacctgttattggaagtagtgct
tttagttataaactgtcgaatggtattcctggtgttgcagtattccaagtaaacttatat
ggggatatcacttatcagttgctgacgttatctgacccacagctggtgtacgacaatcag
aatattgtttccgggcaatttactcagttttctggcattaacaaacaaagcagtgaactt
gcaattggtcaaatttaccaaacttgggcagaggctgcccaaaaaagcattgacgagatt
aaagaaccaaaaccagcaaattctaaaatcgtttctcaaaaaatagatgcatctgttttt
tctgcttaccaatctctgctacctaattctaaatgcattgtttgtaaaaatactgtcatt
agaactggcagtaaaaaagttattgacgatttgagacttcttagttcaaaaaaaattaat
ttaaaccgtgatacaactcatgatcatgatacagatgatagtgattcacaagatgatgtt
gaatggcaaagtggtcaaacaatttctccaaaaagtcggacaccaacttttgactcaaac
actcactgtttacgatgtcgggctaatttaaaaacatcggaaatgctcctcaatgctcat
acatctggcaaggtaaaatggattcctgaagaagatgatccatttgaatatgaagagcaa
tcgttagatgaagattttgaagatttagatctcattgatacttcatgtgcaaaaagtggg
gtcggcaaaattttagtggaaacttgggacggttcgtatcaagacatgtgggattctatg
aaccatgagagaatgatggaagaaaaggcagcagaggcggaaagactgaaagaaatattc
gatttatctgagggtccgaaaaccccacaagattgtggcaatgttaaagctgctcaagaa
gtaaataacgagaacacttctgtgtgggaaagtgataataataacgttataaaaaaaggg
aaaaattatgcttcttctgatttatttggggaaatggcattgaatgcttcagcttctaaa
aatcaaaataaaagtaaagagaaaatgaatctatccttcaagagaacattttcagaaact
gatttttcgaactctgtagacctcagtcaaagcagaaataaccaaaacacgaccagtaca
ccagagttacaatctaaagtaacatcacttgataaaaacgttcaaaaattttctttgttt
tcaagtttaaagttttttcctccaaaaaatttgtcttcctcttttaacgaaccaaaaaaa
tcgaagtcaaattctcaagtgaagagaaaatcttttacacctactgttgggtttctttaa
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