Ciona intestinalis (yellow sea squirt): 100184370
Help
Entry
100184370 CDS
T01056
Name
(RefSeq) probable 28S rRNA (cytosine-C(5))-methyltransferase
KO
K14835
25S rRNA (cytosine2870-C5)-methyltransferase [EC:
2.1.1.310
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100184370
Enzymes [BR:
cin01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.310 25S rRNA (cytosine2870-C5)-methyltransferase
100184370
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
100184370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
Methyltr_RsmF_N
RsmF-B_ferredox
FtsJ
Ubie_methyltran
Motif
Other DBs
NCBI-GeneID:
100184370
NCBI-ProteinID:
XP_002123666
Ensembl:
ENSCING00000008548
LinkDB
All DBs
Position
3:complement(6253220..6261905)
Genome browser
AA seq
693 aa
AA seq
DB search
MGRNQRDPDRVVRGPGPKSRRQKDLAMPKKWKEEQEPNKKISSRAKVRAKKRDLKKQLLT
SLVEAKAEKKEADKIEEEDEIKEEETLQLLSDDDSDDMPDDEFDLDDDDDHVEAEIRDRV
IGEMRGEDHEDDSSDDEGEDGELPIERKTKQVLQKRSQLSKAVKENNIQTNIAETETFVL
PSGQEIEKESTQPPGLDHIHQRIKDVVAVLSDFGNKRDPERTRKDYVNVLRKDLCTYYSY
NDFLLSKFMDMFPLTELIAFLEANEVNRPITIRTNTLKTKRRDLAQALISRGVNLDPLAK
WTKVGLVVYESPVPIGATPEYLAGHYMIQGASSFVPVMALAPQPGERVLDMCAAPGGKTT
YIAQLMKNSGFIFVNDINKARLKAVVGNMHRMGVSNSVISNYDARSFPTIMGNFSRVLLD
APCSGTGVISKDPSVKTSKDDSDITKCSHLQKELILAAIDSCNAQAQNGGYIVYCTCSVM
VEENEEVVNYALKKRNVKLVQTGLEFGVEGFCKYRQYRFHPSLKQTRRFYPHSHNMDGFF
VAKFKKFSNKIPSSDDVKEKQEVKETVTDDAADPSTSTDQDTEDKTSKKRPKESDDNPTP
VKKAKTNKKKQGKKLSMQQVKKYQKRKQKPGALVKPVPGLLAMKRGVTRFIKNKQENKDT
PPKRKVKSPKPKKKFQKKKEEKKNPKKKKEETN
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtaaccagcgtgatccagatcgtgtcgttcgtggcccaggaccaaaatctcgc
cgacagaaagatctagcgatgccaaagaagtggaaagaggagcaagagccaaacaagaaa
atttccagtcgtgcgaaagttcgtgccaagaaacgggatttgaagaaacaacttctcacc
tcgttggttgaagctaaagctgaaaagaaagaagcagataagattgaagaagaagatgaa
ataaaagaagaggaaactttacaacttctatcagatgatgatagtgacgatatgcccgat
gatgaatttgatcttgatgatgatgatgatcacgtggaggctgagattcgtgatcgcgtg
attggtgagatgagaggagaagatcacgaggatgattcaagcgatgatgagggggaagat
ggggaactccctattgagagaaaaaccaaacaagttctacagaaaagatctcaactttca
aaagccgtaaaggaaaacaacattcaaacgaacattgctgaaactgagacttttgttctt
ccaagtggacaggagattgagaaagaaagcacccaaccccctggtctagatcacatccat
caaagaattaaagacgttgttgccgttctttcagatttcgggaataaaagagatccagaa
agaacacgcaaggattacgtaaacgtattacgcaaggacctgtgtacatactacagttac
aatgatttcttgctttcaaagttcatggacatgtttccactcactgagttgatcgcattc
ttagaagcaaatgaagtaaatcgaccaatcactattcggacaaatactttgaaaactaaa
agaagggatttagcgcaagcgttaatttctcgaggagtaaatcttgacccgttggcaaaa
tggacgaaagttggacttgtggtttatgaatctcctgttcctattggtgcaacaccagag
taccttgcaggacattacatgatacaaggtgcttcaagttttgtccctgtgatggcactt
gccccacaaccaggagaacgcgtgttggatatgtgtgctgcacctggagggaaaactaca
tacatagctcaattaatgaagaattctggttttatcttcgtgaatgacatcaacaaagcc
cggttaaaagcagtggtgggcaacatgcataggatgggtgtcagtaactctgttatatca
aactatgatgcaagatcctttcctacaataatgggcaacttttcgcgagtattactggat
gccccatgcagtggtacaggtgttatatcaaaagatccctctgttaaaacaagcaaagat
gattctgacatcacaaagtgttctcatttacagaaagagttgatattggctgctatagat
tcatgtaatgctcaagcacagaatggtggatatattgtttactgtacatgttctgtcatg
gttgaagaaaacgaggaagttgtaaattacgccttgaagaaacgtaatgttaagttggtt
caaactggccttgagttcggagtggaaggattttgcaaatatcgccaatatcgattccac
ccaagtttgaaacaaactcgtcgcttctaccctcactcacataacatggacgggtttttt
gttgcgaaatttaagaagttttcaaacaagataccgagttctgatgacgtgaaagaaaaa
caagaagttaaagaaacagtaactgacgatgctgctgatccaagcacttccactgatcaa
gataccgaagacaaaacttcgaaaaaacgtccaaaagaatcggacgacaatcccacacct
gttaagaaagcaaagacaaataaaaagaaacaaggtaaaaagctgagtatgcagcaagtt
aagaaatatcaaaaacgaaaacagaagcctggagctcttgtcaaacctgtacctggtttg
cttgccatgaaacgaggggttacgaggtttatcaaaaataaacaagaaaataaagacacc
cctcctaaaagaaaagtaaaatctccgaaaccaaaaaagaaatttcagaagaaaaaagaa
gagaaaaaaaatccaaagaagaaaaaagaagaaactaattga
DBGET
integrated database retrieval system
