Ciona intestinalis (yellow sea squirt): 100184382
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Entry
100184382 CDS
T01056
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B-like
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cin04040
]
100184382
Ion channels [BR:
cin04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
100184382
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100184382
NCBI-ProteinID:
XP_026693133
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All DBs
Position
13:889141..926636
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AA seq
2146 aa
AA seq
DB search
MKSSAKNNWYGVVRAVNSAKTSFLGTHEKDNEKQRAQEENETRKQAARWRKRHLSQTGFE
PSSFGRVNPAFNSSSELTRFDFQNDKLGYDEAKCWEYYYSNTSMDNLKDRGESTKDLNPG
SSWSIDRMTEDRNHNFAVDETYRGNNGTSNDYERHTNERSNSIYDRFGIQPQHIVDEPAD
ISDASSWHSDLYRISPNTQRRSMKDTSPARCRRGAVIGGQKDIAVAHEKHKMARFAEEAY
PNKRQRGFPGGGGGFGGPGGPKGRKGRGQGGPYKMTLAQQARTMSYYNPIPKQQNCITAN
RSLFVFGVDNVVRKLAKRIIEWPPFEYLILATIVANCIVLALEEHLAAGDKTPRTIRLEG
TEPYFLGIFIVEAAVKILALGFVLHKDSYLRYGWNIMDFTVVVTGCVTYFDTSLGSGFQT
LRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIAVLLLFFIVVCSIVGLELYMGRFH
RTCYSNSTNKIIRDNQICSEDNSASYGKYVCENGSYCGDWPLGPNHGITTFDNIIFSMMT
VFQCITMEGWTDILYFAVDSDGSNIVNLIITHILFFSIITLGSFGLLNLVFGALAAEFAK
ERERVENRMAFLKVRKKQQMDRELDGYLEWMQKAEEVILAEEDRTLEKSAQEAHRRKAAY
RKSKVDLLDSAESSFTDISATVIGNSNRFTRSNPNTKPTNTCLAWLSHKEKRFRVKCRHL
VKSPVFYWIVLFLVLLNTAFLSSVHYKQPKWWEDFLYYAEFVFLGLFSGEILLKVYGLGP
RTYFRSSFNIFDFVVIIGSIFEIIWSVIRPDASFGISVLRALRLLRVFKFTSAWSGLRNL
VVSLMSSLRSIVSLIFLLFLFLVVFALLGMQIFGGRFSFKDGKPNSNFDSFPSAILTVFQ
ILTGEDWNMVMYNGVEAKGGVKNGGLWWSLYFIFLVMFGNYTLLNVFLAIAVDNLANAQE
LTKDEEEEKDNKEAQKALRVAREIESVSPGSMENVRIKLSDSFNKNNLQRTAWERRQHEF
RKQRRTLRMKRDQNGLVTDDDSDDDLYVPGERRSGKYFDISSFNKDKEGIQGAATANGIS
SQHGSPTKQVGNDDHIIGQSIIGGESRFLSRQNSLRVRNTPMRELGILPSSGEVAEINQT
ENTRENSIMADTPVAMEDGKGTVRSSGEVDEEEDNGPKPVLPYSSMFIFSPTNPIRLACH
YIVNLKYFETTILVIIILSSLTLATEDPVTKDSQRNNVLKYFDYIFTAVFTFEMVMKMID
LGLVLHPGSYFHSLWNILDFVVVCSALVGFALTASNNPQLDLGVIKSLRVLRVLRPLKTI
KRLPKLKAVFMCVVNAFRNVATILIVYMLFMFIFAVIAVELFKGKFFYCTDPMINVESEC
KGKFFYQSPESDNKEVSERQWLQHDFHYDNVLYSFLTLFVISTGEGWPEVLWHSIGSTYE
DKGPERGFRMEVSIFYIVFFVVFPFFFVNIFVAFIIITFQEEGDKAMSNCSLEKNERACV
DFAISSKPLTRFMPEDKHSLQYHVWKVVVSPVFEWIIMALIVLNTVVLMLKDYWRIKQSP
NYENILQYCNMAFTAIFTIECIIKMAAFKPINYFRDSWNIFDFITVVGSIADVTITLVAM
IQKLYLPLDQQHDMSGFINLSFLRLFRAARLIKLLRQGETIRILLWTFVQSIKALPYVCL
LIAMLFFIYSIIGMQLFGNIQLDPNSAINHHNNFTHIFQALMLLFRCATGEAWQSVMLAC
VSANCDPRAGIDKENGCGSVISYIYFTSFIFFCSFLMLNLFVAVIMDNFEYLTRDSSILG
PHHLDEYIRVWAEYDPQASGYIKYTDMFTMLRHMEPPLGFGKNCPYRVAYRRLIQMNMPI
NEEKQVHFTTTLLALIRTSLKIKMLPQDAAGIDKTYRDQWQLDQELRQEIRLAWPNLNEK
KMNLLLPPEGETQFTVGKVYGAMLVYEHWRAYKSRRDGKNPTLGQRPNIFPRMAAPATSS
NNTDPQLDNPPIGDPLSSQALSMVSIVSAASANAGVHLPKGCNSLSPYGSRDTTPYSSPT
TERRSKLQVPHPYKQLEPLRNNAATSQVEPVYAQCVDHDITPTIDDVTVAYQSGGFETND
YMQYTTPEDCMANNTYRTTTLADDVMTRDVICDDFTASSPFIRSND
NT seq
6441 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcgtcagcaaagaataattggtacggcgtagttagagccgtcaactctgcgaag
acatcttttctcggcacccacgaaaaagacaacgaaaaacagcgagcccaagaggaaaac
gagaccagaaaacaagccgcgaggtggcgcaagagacaccttagtcaaactggtttcgaa
ccatcttcatttggtcgtgtgaacccagcttttaactcaagttccgagcttaccaggttc
gatttccagaacgataagttggggtacgacgaagcgaaatgttgggagtattattatagc
aatacttcaatggataatttgaaagatagaggagaatcaaccaaagacttgaacccggga
tcttcatggtctatagaccgcatgacagaggacagaaaccataactttgcagtcgatgaa
acttaccgagggaataacggaacaagcaatgattatgaaaggcatacaaatgaacgaagc
aacagcatctacgaccgctttggtatccaacctcaacacatagttgacgagcctgcagat
atttccgatgcttcaagctggcattccgatctttaccgaatctctccgaacacccagcga
cgatcaatgaaggatacatcacccgcaagatgtcgccgcggagcagttattggcggccag
aaggacatagccgttgcgcatgaaaaacataaaatggctcgttttgccgaagaagcttac
cccaacaaacgccaaaggggattccccggtggcgggggcgggtttgggggtcctgggggc
cccaaaggacgtaaggggcggggccaaggtggaccttacaaaatgacccttgcccaacaa
gcacgtacgatgtcttactacaatccaatcccaaaacaacagaactgcattactgccaat
cgttcgttattcgtgtttggagttgataatgttgtgaggaagttggcgaaacgaatcata
gagtggcctccgtttgagtatttaatccttgctacgatcgttgctaattgcattgtgctc
gctctcgaggaacatctagcggccggagataaaacaccaagaactatacgtttggaaggt
acagagccatactttcttggtattttcatcgtcgaagctgcagttaaaatattagcattg
ggattcgtattacataaagactcgtacttacgttacgggtggaatataatggactttacc
gtcgtagtaactgggtgcgttacgtactttgacacttctctcggctctggttttcagacg
cttagagccgttcgcgtactgaggccacttaaattagtgtctggaattccaagtttacaa
gtcgtgttgaagtctattatgaaagccatggtaccattgctacaaattgccgtgcttctt
ctgtttttcatcgttgtttgctctatcgttggtttagagttatacatgggaaggtttcac
aggacctgctacagtaactctacaaataaaattatccgagacaaccaaatatgcagtgag
gataattctgcaagttatgggaaatatgtttgtgagaatggctcctattgtggtgactgg
ccccttggtcccaaccatggaataactacatttgataacattatcttctccatgatgaca
gtgttccaatgcattacaatggaagggtggaccgatatcttatattttgctgtggacagt
gacggatccaatatagtgaatctcataatcacccatatcttattcttctcaataattacg
cttggttcatttggcttgttaaaccttgtgttcggcgctttagctgctgagtttgccaaa
gaacgagagcgtgtggaaaatagaatggcatttctaaaggtaaggaaaaaacagcaaatg
gacagagaactggatggttacctagaatggatgcaaaaagcagaagaagtaatactagct
gaagaagacagaacacttgaaaaatctgcacaagaagctcatcgcaggaaagcagcttac
cgaaagagcaaagtggatttattggattctgcagaaagttcattcacagatatttcagcc
actgtaataggtaacagcaatcgttttacgcgttcaaatccgaacactaaaccaaccaat
acctgccttgcctggctttctcataaagaaaaaagattcagggtaaaatgtcgccatttg
gtcaaatctcctgtgttttattggattgtgttattccttgtgttgctgaacacagcattc
ttatcaagtgttcattataaacagcctaagtggtgggaagattttctatattacgctgag
tttgtttttcttggcttattctctggggagattctattaaaagtgtatggacttggacca
aggacttattttcgttcctcattcaacatttttgattttgtggttatcattggttcaata
tttgaaattatttggtcggtaatacgacctgatgcttcatttggaatcagcgtacttcgt
gctctaagattgttacgagtgttcaaattcacaagtgcttggtctggtttacgaaacttg
gtcgtctccctgatgagctccctcagatccatcgtgagtctcatcttcctcttgtttctc
ttcctggttgtgtttgctcttctagggatgcagatctttggaggcagattcagtttcaaa
gatggaaaaccgaattccaattttgactcttttcccagcgctattctcactgtatttcag
attttaactggagaagattggaacatggtaatgtataatggtgttgaagcaaaaggagga
gtcaaaaatggtggactatggtggtctctctactttatattcctggttatgtttggaaac
tacactttgttgaatgtctttcttgctattgccgtggacaaccttgcaaatgcgcaagag
ctgacaaaggatgaagaagaggaaaaagacaacaaagaggctcaaaaagcacttcgagtt
gcgcgtgaaattgaatctgtttctcctggatcaatggaaaacgttcggataaagttaagc
gactctttcaataaaaacaacctacaaaggacagcatgggaacgaaggcaacacgagttc
cggaaacaaagacgaactttacgaatgaagcgcgaccagaatggtttggtaaccgatgat
gacagtgatgatgatctatatgttcccggtgaacggcggagcggaaaatacttcgacatt
tcaagttttaataaagataaagaggggatccaaggagctgctacagcaaatggcatctct
tcacaacatgggtctcctacaaaacaagttggtaacgatgatcatatcattggacaatct
attattggtggggaaagcaggtttctgtctcgtcaaaacagtcttcgtgttcgaaataca
ccaatgagagagcttggtatactcccatctagtggtgaagtggcagagatcaatcagaca
gaaaatactcgcgaaaattcaattatggctgacacccctgttgcaatggaggatggaaaa
ggaacagtgcgctctagtggcgaggttgacgaggaagaagataacggacctaaaccagtg
ttgccgtatagttctatgtttatattcagtcctactaatccaatacgacttgcatgtcat
tacattgtgaatctgaaatactttgagacgaccattttagttatcatcattttaagcagt
ttaactcttgctactgaagacccagtcactaaagactcgcaaagaaataatgttctgaaa
tatttcgattatattttcacagctgtcttcacatttgaaatggttatgaagatgattgac
ttgggtcttgtgcttcaccctggctcctacttccatagtttgtggaatattctggatttt
gttgttgtgtgcagtgctctggtgggatttgccttgacagcatcaaacaacccccaatta
gatctcggtgtgatcaaatcacttcgtgtactacgtgtcttgaggcctctaaagacaatc
aaaagacttccaaagctaaaagctgtattcatgtgtgtggtgaatgcattccgcaatgta
gccaccatccttatagtttacatgctattcatgttcatattcgctgttattgctgtggaa
cttttcaaggggaagttcttctactgcactgatcctatgattaacgtggaaagtgaatgc
aagggtaaattcttctaccagtctcctgaaagtgacaacaaagaagtgagtgaacgacaa
tggttacaacatgactttcactatgataatgttctttattcgttcctcacattatttgtc
atttccactggggaaggatggccagaagtcctgtggcattccatcggatccacgtatgaa
gacaaaggtccagagcgtggcttccgtatggaagtgagcatcttctacatcgtgttcttc
gttgtgttccccttcttctttgtgaacatctttgttgcttttattatcatcacttttcaa
gaagaaggagacaaagcaatgtcaaattgctcgctggagaaaaatgagagagcttgtgtg
gactttgctatttcttcaaaacccctcacacgtttcatgcctgaggataaacatagttta
caataccatgtatggaaagtagtcgtgtctccggtatttgaatggataatcatggctctt
attgttcttaacacagtagtgcttatgctaaaggactattggagaatcaaacaatcacct
aattatgagaacatacttcagtattgtaatatggcatttactgctatcttcaccattgaa
tgcattatcaagatggcagctttcaaaccaattaattacttccgtgactcttggaacata
tttgatttcatcactgttgttggaagcattgctgatgtcaccatcaccctcgtcgctatg
atacagaaactgtatctcccacttgaccagcagcatgatatgtccgggtttataaatctg
agcttcttacgtttgttccgagctgcgagattgattaaactgctcaggcaaggtgaaact
atcaggatactgctttggacatttgtgcaatctataaaggctctcccatatgtttgtctt
ctgattgccatgctcttcttcatttactcaatcattggaatgcaactgtttgggaatatc
caacttgatcctaacagtgctatcaaccatcataataacttcacacatatatttcaagct
ctgatgcttctgttcagatgtgcgacaggtgaagcatggcaaagtgttatgttggcttgt
gtatccgctaactgtgacccaagagctggaattgataaggagaatggatgtggatcagtg
atctcgtacatctactttacaagcttcatattcttctgttcgttcctaatgttgaactta
tttgtcgctgttattatggacaactttgaatatttaacccgagattcttcaatacttgga
cctcatcatctcgacgagtatatacgagtatgggcagaatatgacccgcaagcatctgga
tatattaaatacactgatatgtttacaatgctaagacatatggaacctcctttagggttt
gggaagaattgtccatacagagttgcttatcggaggttgattcaaatgaacatgccgatc
aatgaagagaagcaggtccacttcactaccaccctacttgctctaataagaacatcactc
aagatcaagatgcttcctcaagatgcagctggtattgataagacgtacagagaccaatgg
caactggatcaagaactacgccaagagatacgtcttgcatggcccaacttgaatgaaaag
aaaatgaacttactactgccacctgaaggagaaactcaattcactgtgggcaaagtttac
ggagccatgctggtgtacgagcactggagggcatacaagagccgcagagacgggaagaat
ccaactcttggtcagagacccaatatattccctcgcatggcagccccagcaacaagtagt
aataatactgacccacagctggacaaccctcccattggagatccactcagctcacaagct
cttagtatggtctcaattgtgtctgcagcttctgctaatgctggggtccatctaccaaaa
gggtgtaactctttatccccatatgggtcacgagacacaactccctactccagcccaacc
actgagcgacgatcaaagttacaagtcccccacccatacaagcagcttgaaccgttacga
aacaacgctgctacatcacaagttgagcctgtttacgcacaatgtgtggatcatgacatc
acacctacaattgatgacgtcacagtagcataccaaagtggtggcttcgaaactaacgac
tacatgcaatacacaacacctgaagattgcatggcaaacaacacataccgtactacaact
ctagctgatgatgtcatgacccgtgatgtcatatgtgatgatttcacagcctcttcacca
ttcatacgctctaatgactaa
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integrated database retrieval system
