Ciona intestinalis (yellow sea squirt): 100184434
Help
Entry
100184434 CDS
T01056
Name
(RefSeq) low-density lipoprotein receptor-related protein 4 isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100184434
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cin04990
]
100184434
Membrane trafficking [BR:
cin04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
100184434
Domain-containing proteins not elsewhere classified [BR:
cin04990
]
Laminin domain-containing proteins
Laminin EGF-like domain-containing proteins
100184434
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
Ldl_recept_a
FXa_inhibition
cEGF
SGL
DUF5050
EGF_CA
Motif
Other DBs
NCBI-GeneID:
100184434
NCBI-ProteinID:
XP_018667004
LinkDB
All DBs
Position
4:complement(418783..439431)
Genome browser
AA seq
2056 aa
AA seq
DB search
MNNSYTPKAWIIFCLAIITIVCVTSMPECKCKRKQFACSVSNKCTCIPVAWKCDGDTDCG
DASDEMDCVIPTCRPSSFQCDNGKCIMAEWKCDGENDCGDDSDEVSCPIQPCDESTEKTC
GSGDCVPKRWWCDGDEDCSDGSDETDCNRRTCGGTEYACTSGECVSSAFNCDGDFDCRDG
SDEECAEEPADPDVIPSNSNFTACKDEEFSCAGSDSEVGHGQLDFCIPFEYVCDQELDCD
NGIDERNCSHPCTDEQYRCGNGQCIGLHNHCDGQDDCGDGTDEINCPEYEECIYGEFKCK
SGMCISEAWRCDGDSDCNDGSDEQNCHEEPLGCNDDQFECFTSKRCIRISWRCDGEHDCS
DQSDEIECDTCGSGKHRCNNGQCIGMHKVCDGVVDCLDSSDESPRRACNGSNMLPTNFTS
CADNNGGCEHTCRESLSGRAQCICRKGFELSPDLSSCIDLNECNEEASCSQVCNNTIGSF
VCSCLHGYILRPDSRTCKASGPEPALLFTNRIDIRKILPDRSEFRSILRDLENAIGLDYH
IDKGLMFWTDVTLDRIMRSYVNGSDVQEVVSSGLESPGGVAVDWIHNLLYWTDSGTSRLE
VSLLDGSLRKVLVWERLEKPRALALHPLHSLMFWTDWGDTPRLESAAMDGSQRHTVASRN
LHWPNGLAIDYTRNHIYWADAKYHIIEKANLDGGDRRAVISRGLLHPFGVTIFEDKLYWT
DWQTKSVNSANKFTGRGVKTIRSRLHFPMDIQTYHPLRQPNGHNRCEQAHCSHLCLPRPD
GITCACPTGFRRVNITHCAEDINHFLVFTRKTDIRRISFDGVERADTVLPVKNLKNAVAL
DWHSDHPGHIYWSDVSKDTISRAEWDGSQEKVIVSSSLDSPAGLAIDWITNKIYWTEAGI
NRIEVALLDGSMRCVLIWTGLDRPRAIVVHPKTGHMIWSDWGAEPKIERAGMDGTNRTTL
VSTGLTWPNGVAIDYTSDMIYWTDAGAKTIETCDLHGAQRRVLVNDDLPHPFGITLDATR
IYWTDWQSKCISSADKVTGGDRTVLRENLEYLMDIRFYHKSRPMTPNPCSVRNGGCTHLC
LLSPNIGEGSHNILSTPYRCACPTGLTLSPDRHKCNTEMNKFLAIARRTDIRVISLDVQY
SADVKLPIKSYLANVVDVAVEPRDGYLYWSDIGSHEISRSHLIDPTVSEVVISSGLDIVE
GLAIDAVGRLLYWTDDGRDIISVSTLDGKHKRILINDDLGSPRAITLHYGIGYMYWTDWG
NKPSAKIERAGMDGSDRSVIIDTGLTWPNGITIDTELGWLIWGDAQTEKIERSDLLGRNR
TILYSSSPHPYSISCLDGLVYWTDWETRDVRRLDLHNTSDVQTLRGNMPSMMGMKAVSME
PPAANMCGLNNGGCSHLCIRSPTSTTGFICACPTGVRIKEDKQTCDDLPTEYLLFTTRLS
IRRVSLEADKNSYVELPAGELENTIALDYHYGRQLLFFTDVYLDVIKRSNLDGSDTKVIV
SRNLKTTDGVAVDWVADNIYWTDAGPNTISVARLDGTSRKVVIDQGLDEPRALVVHPSRG
IIFWTDWGDKAKIEKANMDGSARKTLVRKNLQWPNGLTIDYNNSRLYYVDAYDELNRIET
CDFNGRKRKVVVSPVPHGFAITYLSGTLYWTDWQTSSIHSITYPFNSSKRKTILGGVEGL
MDIKAVSSKRQTGTSLCDTMNGYGGCSHLCLMKGSRTLTCACPDPIDPPQAPVADSILPN
INHESPDGGVLNNCSLTPVRIIKHSSTHAPALVTAYDLTTLSSEGTLHNNISVDTKAEAQ
PIVIHVLAVFLAAALIVFVIIVVFGFFMWKKIKKRKTPRSNIPSNDNATVTYRNNVSYRS
GSNSLLHHNNTSSEHTPTLWPGVDPRNKHERSSLINRSENETHPADDSLPTSEDDRYDET
STQYSRVSTLEGPKTKLPSRKLGTVGLPTSRDHQLTAPQALPLLRVTNSPQTCQATNQLA
YCIDDGDVSSCYSDDDFSNCGDVPSPIPSKAKSKNRLLRNLLDKQPKMSVTTTCTMLSED
DCQSSEAISANSGTND
NT seq
6171 nt
NT seq
+upstream
nt +downstream
nt
atgaataattcctacacaccgaaagcctggattattttctgcttggcaatcattaccatt
gtgtgtgttacatcaatgccagagtgcaaatgcaaacgaaaacagtttgcatgctctgtt
agtaacaaatgtacgtgcataccagtagcttggaaatgtgatggagacaccgactgtgga
gatgcgagtgatgaaatggactgtgtaatacccacatgtcgaccctcttcgtttcaatgc
gacaatggaaaatgcatcatggcagaatggaaatgcgatggtgaaaacgactgtggtgac
gatagtgacgaagtttcgtgcccgatccagccatgcgacgaatcgacggagaagacgtgt
ggatctggcgattgtgtgccgaaaagatggtggtgtgacggtgatgaagattgttctgat
ggaagtgatgaaactgattgtaatcgtcgaacttgtggtggtacagaatacgcatgcaca
agtggagagtgtgtgagttcagcatttaattgcgatggtgattttgattgtcgggatggc
tcggatgaagaatgtgcagaagaaccagcagacccggacgttatcccaagcaattcaaac
tttaccgcatgtaaggacgaggagttttcgtgcgcaggcagcgactctgaagtcggccac
ggtcaacttgacttttgcattccattcgaatatgtatgcgaccaagagcttgactgtgat
aacggaattgatgaacgaaattgcagtcacccatgtaccgatgaacaatatagatgtggt
aatggccaatgtattggcttgcataatcactgtgacggccaagacgactgtggagacggg
acggatgaaatcaactgtcctgaatatgaggaatgtatttatggagagtttaaatgtaaa
agcgggatgtgcataagtgaagcgtggaggtgtgatggagatagcgactgcaatgatgga
tctgatgaacagaattgtcatgaagaaccactaggttgcaacgacgatcagttcgaatgt
ttcaccagcaaacgatgcattcgtataagttggagatgcgatggcgaacatgactgttcg
gatcaaagtgacgaaatagaatgtgatacttgtgggagtggaaaacacagatgcaacaat
ggacaatgtattggaatgcacaaagtatgtgatggagttgtcgactgcctcgactcctct
gatgaaagtccaaggagagcatgcaatggttcgaacatgctaccgaccaattttacttca
tgcgctgataataatggaggatgcgaacacacttgtagagaatctttatcaggaagggct
caatgtatttgtcggaaaggatttgaactgtcacccgatctttctagttgcattgattta
aatgaatgtaacgaagaggcatcgtgtagtcaggtttgcaacaatacgatcgggagtttt
gtatgttcttgtttgcatggatacattctacggcctgatagcagaacttgcaaggcaagt
ggtcctgagccagctctcttgtttaccaaccgcatcgatattcgaaaaatacttcccgat
cgctccgagtttcgatccattttacgagacctggagaatgccattggtttagattatcac
atcgataaaggcttgatgttctggaccgacgtcacactagatcgtattatgaggtcatac
gtaaacgggagtgacgtgcaagaagtggtttcatctggtctggaaagcccgggtggtgtg
gcagtcgactggatccacaatcttttatattggactgattccggtacttcaagattggag
gtttcattattggatggatctcttcgtaaagtgcttgtttgggaaagactggagaagcca
agagctcttgcccttcacccattgcatagtttaatgttctggacggattggggtgatacg
cctcgtttggaaagcgctgctatggatggtagtcaacgtcacacagttgcctcacggaac
ttacattggccaaatggtcttgctattgattacacgaggaatcacatatattgggctgat
gccaaataccatattatcgaaaaagcgaacttggacggtggagaccggcgcgctgttata
agcagaggcttgctgcacccatttggagttactatttttgaagacaaattatattggacc
gattggcaaacaaaaagtgtgaacagcgccaataaatttacgggcagaggagtaaaaacg
attcgaagtcgtcttcacttccccatggacatccaaacataccacccactacgtcaaccg
aatggccacaatcgttgtgaacaagcacactgtagccacctgtgtcttccacgacctgat
ggcattacatgtgcttgccccaccgggttccgacgcgtcaacatcactcactgcgctgaa
gatatcaaccatttcttggtttttaccagaaagaccgacattcgtcgcatctcattcgac
ggcgttgaaagagcggacacagtactcccagttaaaaaccttaaaaacgctgtcgcactt
gactggcacagcgaccaccccggccacatttactggtctgacgtcagcaaggatactatc
agcagggcggaatgggatggaagccaggaaaaggtgatcgtcagtagcagtttggactca
ccagccggtctcgcaattgactggatcaccaacaaaatatactggacagaagccggtata
aaccggattgaagtcgcattgctggacggttcgatgcgatgcgttttaatttggacaggc
cttgataggccaagagccatcgtggttcatcccaaaacgggccatatgatatggtccgat
tggggagccgaacccaaaatcgaacgagctggtatggacggtaccaaccggactacgctg
gtttcaactggtctaacgtggcccaatggcgtggctattgattacacatctgatatgatc
tattggaccgatgctggggctaaaaccatcgaaacttgtgacttacatggtgcccaacga
cgagttttggtcaatgatgatttacctcacccgttcggtatcacactggatgccacacga
atatattggactgattggcaatcgaaatgtatcagtagcgccgataaagtcactggaggc
gatagaacagttttgcgagaaaatcttgaatatttgatggatattcgattctatcacaag
tcaagacccatgaccccaaatccctgctctgtccgaaacggaggttgtacacatctgtgt
ctgttgtcaccaaatattggcgaaggaagtcacaacatattatccaccccctatcgctgc
gcttgcccaactggacttactttaagtcccgaccgccacaaatgcaatacggaaatgaac
aagtttttggcgatcgcgcgacgaaccgacattcgtgtcatttcattagatgttcagtat
tcagctgatgtaaaacttccaatcaagtcttatttagcaaacgttgtggacgtggctgtc
gaaccacgtgacgggtatttatattggtctgatatcggctcgcatgaaatatcacgaagt
catcttatcgacccgactgtaagtgaggttgttatttcttctgggttggacattgtggaa
ggtctagctattgatgctgttggtcgtttattatattggactgacgatggtcgggatatt
atatctgtgtctacattagatggaaagcacaaaaggattttaattaatgatgacttgggc
tcaccaagagctatcaccctacattatggaatcgggtatatgtactggaccgactggggt
aacaaaccgtctgccaaaatagaaagagctggtatggacggtagtgaccgttctgtaatc
atcgatacaggtctcacatggcccaatggaataaccattgatactgaacttggatggttg
atttggggagacgcacagaccgagaaaattgaacggtcggatcttcttggcagaaaccgc
acaatactttattcatcttcaccccacccttacagcattagctgtttggatggattagtt
tattggacagactgggagaccagagatgtacgtcggcttgatctccataacacgagtgat
gtgcaaactttgcgtgggaacatgcccagtatgatgggtatgaaggcagtttccatggaa
cctcccgcagccaacatgtgtggccttaacaacggcggttgtagccatctgtgtattcga
agtccaaccagtacaacaggatttatttgcgcatgtccaacgggggttcgtattaaagaa
gacaaacaaacgtgcgacgatcttcctactgaatatctcttgtttacgacccggctgtcg
attcgcagagtttctttggaggcggataaaaactcctacgttgaactacctgccggtgaa
ttggaaaacaccattgcattggattaccattatggccgacaacttctgtttttcactgac
gtttacctggatgtaattaaacggtcaaacttggatggatcggatacgaaagttattgtc
tcaagaaacttgaagacaactgatggagttgctgttgattgggtggcggataatatttat
tggaccgatgctgggcctaacacaatatctgttgcgagactggatggtacaagcaggaaa
gtggtgatcgaccaaggattggacgaaccacgggcattggttgttcacccatcacgtggg
ataatattctggacggactggggagacaaggcaaaaatagaaaaagcaaatatggatgga
agtgctagaaagactcttgttcgaaagaacctgcagtggccgaacgggctgacaatcgat
tacaacaattcaagactctactatgtagacgcatacgatgaattaaaccgcatcgagact
tgcgattttaacggaagaaaacgaaaagttgttgtttcaccagtgccacatgggtttgct
attacatatttgtccggaactttatattggacagattggcaaacgtcaagcattcattca
attacgtacccatttaattcttcaaagcgtaaaacaattcttggtggcgtggaaggcctt
atggatatcaaggcggtttcatcaaaaagacaaaccgggacaagtctctgcgacacaatg
aatggttatggaggttgttcgcatctatgtttaatgaaaggttcacgaacgttaacatgc
gcttgtcctgatcctatcgatccaccacaagctcctgtggccgatagtattttgccaaat
atcaatcatgaaagtcctgatggcggagtgttaaacaattgtagtcttactccagtccga
ataataaaacattcatctacacacgcacctgccttggttacagcatacgacctaacaact
ctttcaagtgaaggaacattacataataatataagtgtggacacaaaagcagaagctcaa
ccaattgttatccacgtgcttgctgtgttcttggcggcggctctaatcgtttttgtaatc
atcgttgttttcggattttttatgtggaagaaaattaagaaacgcaaaacaccaaggtcc
aacatcccgagcaatgataatgcaacagtgacctacagaaacaatgtcagttacagaagt
ggcagcaactctttacttcaccacaacaacacgagcagcgagcatacacctaccttgtgg
cctggtgttgacccgcggaataaacacgaaagaagttctttgataaatagatctgaaaac
gaaactcatccggcggacgattctcttccaacatcggaagatgatcgttatgatgaaact
tcaacacaatacagcagagtttcaacattggaaggtcccaagacgaaactaccaagtcga
aaacttgggactgttggattacctacctcacgagaccaccagcttactgccccacaagcg
ttacctctattacgtgtcacgaacagtccgcaaacttgccaagctacgaaccaactggcg
tactgtatagatgacggtgacgtcagcagttgctatagcgacgatgacttctcgaattgt
ggggatgttccctcaccgataccttcaaaggccaaatcaaagaaccgattacttcgtaat
ttattagacaagcagccgaaaatgagcgtaaccacaacatgtacaatgctttctgaggac
gattgccaaagttcagaagcgatatcagcaaactcaggcaccaacgattaa
DBGET
integrated database retrieval system
