Ciona intestinalis (yellow sea squirt): 100184465
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Entry
100184465 CDS
T01056
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100184465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100184465
03019 Messenger RNA biogenesis [BR:
cin03019
]
100184465
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100184465
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
100184465
U7-dependent histone pre-mRNA processing factors
100184465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
BSH_Fcp1
Motif
Other DBs
NCBI-GeneID:
100184465
NCBI-ProteinID:
XP_002128016
Ensembl:
ENSCING00000007214
LinkDB
All DBs
Position
2:6680283..6688511
Genome browser
AA seq
690 aa
AA seq
DB search
MAEFEVEETPHNDSELLKITPLGAGQEVGRSCHLLEFKEKKIMLDCGIHPGISGLAGLPY
IDFTEPEKIDLLLVTHFHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRWLLSDYIKVSN
ISTEDQLYTEADLEDSMARIETINFHEEKMVGGIKFWCYHAGHVLGAAMFMIQIAGVRVL
YTGDYSREEDRHLMAAEIPAVRPDVLITEATYGTHIHEPREEREARFTNTVQDIVNRGGR
CLIPVFALGRAQELLLILDDYWANHPELHDIPIYYASSLAKKCMAVYQTYSNAMNQKIQK
QLNISNPFQFKHISNLKGMEHFDDVGPSVVMASPGMMQSGLSRELFESWCNDRRNGVIVA
GYCVEGTLAKHILSEPEEVVSMSGQKIPLKLSVDYISFSAHADYKQCSEFVRAMKPPHVV
LVHGEANEMNRLKLALNREYEDDPEPIQIHNPKNTESVQLYFKGEKMAKVMGELATTKPK
HGDKLSGILVKRNFNYHILAPSDLSAHTNLTMSTLTQRQSVTFTASLSLLKYYLHQLSDD
VVVLPLSNGREGLRVFGAVTVVKEQNMLLLEWTANPVNDMYADSVLAIVLRVDTDPQARK
IPVQRIAKPDLNREFRERLEVMLEGMFGEESFKDPTSSGPDQINLEVDGFEIHINTKTRV
VTCAGDENVAEMLEESIRRLYTTIMPVETV
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcggagttcgaggttgaggaaaccccccataatgacagtgaacttctaaagatcacc
cctctcggagccggacaggaagtgggcaggtcatgtcatcttttggagtttaaagaaaag
aaaataatgttagattgtggcatccatcccggtatcagtgggttagcaggccttccatac
attgatttcacggaacctgaaaagattgatttactgcttgtaacacattttcacctggat
catgctggtggccttccttggtttttacagaaaacaacatttaaaggcagagtgttcatg
acgcatgctactaaagctatttatagatggttactatcagattatatcaaagtcagcaat
atttcaaccgaggatcaattatacaccgaggcagatcttgaagactccatggctaggatt
gaaacaataaacttccatgaagagaagatggtaggggggattaagttctggtgttatcat
gcaggtcatgtgcttggagctgccatgttcatgatacagatagcaggtgttcgtgtttta
tacaccggggattattcacgagaggaagaccgccacttaatggcagcagagatacccgct
gtacgaccggacgttttaattactgaagccacatatggaacacacattcatgagccgaga
gaagaaagagaagccaggttcacaaacactgtacaagatattgtaaacagagggggaagg
tgtcttatacctgtatttgcactgggaagggcacaagaactattattaatattagatgat
tactgggcaaaccaccctgaattacatgacatcccaatctactatgcatcaagtctagca
aagaaatgcatggcagtttatcaaacttactccaatgcaatgaaccagaagatacaaaaa
caactcaatatttcaaacccgtttcagttcaagcacatctcaaacctcaagggtatggaa
cattttgatgatgttggtccatctgttgtgatggcatcaccgggcatgatgcaaagtggt
ttatcacgggagttgtttgaaagttggtgcaatgatagaaggaatggagttatagtggct
ggttactgtgtggaggggacactagccaagcatatcctcagtgaaccagaggaggttgtt
tcaatgtcaggacagaagattccactcaagttgtcggtggattatatttcattctctgct
cacgctgattataaacaatgctctgagtttgtccgtgctatgaaacctcctcacgtggta
ttagtccatggtgaagcaaacgagatgaaccgtttaaaacttgcactgaatcgtgaatat
gaagacgaccctgaaccgattcaaatccacaaccccaagaacacagaatctgtgcagctt
tatttcaaaggcgagaagatggcgaaagtaatgggggagttggcaaccaccaaaccaaaa
catggagacaaattatcagggattttagtgaaaaggaatttcaattatcacattttggca
ccaagtgacttatcagctcataccaacctaactatgtccacgctcactcaacggcaatct
gtaactttcactgcctccttatccctacttaaatattacctacaccaactgtcagatgat
gttgttgtactacccttgtctaatggtagggagggattgagggtgtttggagcggtcacg
gttgtaaaggaacaaaatatgcttctgttagagtggacagccaacccagtaaacgacatg
tatgctgattctgtgcttgctatcgtgttacgagttgatactgacccacaagcaaggaag
ataccggtacaaaggattgctaaacctgatctaaatagagaatttagggagaggttggag
gtgatgctggagggcatgtttggggaggaatcttttaaagatccgacatccagtggtccg
gatcaaataaatcttgaggttgatgggtttgagattcatattaataccaaaacaagggtt
gtgacatgcgctggtgatgaaaacgttgctgaaatgttagaagaatcaataagacgactt
tacacaacaataatgccagtggaaacagtctag
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