Ciona intestinalis (yellow sea squirt): 100184475
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Entry
100184475 CDS
T01056
Name
(RefSeq) slit homolog 2 protein isoform X1
KO
K06839
slit 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
100184475
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
100184475
Glycosaminoglycan binding proteins [BR:
cin00536
]
Heparan sulfate / Heparin
Axon guidance molecules
100184475
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRR_9
LRRNT
LRR_14
EGF_TEN
LRRCT
hEGF
EGF_Epiregulin
EGF_TGFA-like
Motif
Other DBs
NCBI-GeneID:
100184475
NCBI-ProteinID:
XP_018668562
Ensembl:
ENSCING00000005369
LinkDB
All DBs
Position
8:complement(3069933..3113857)
Genome browser
AA seq
1531 aa
AA seq
DB search
MWKILFLFTVCYNGFTNACPNECVCRGKTVTCTGRSLTYIPRNIPQVTERLELHRNNITQ
ITRNDLSGLTHLRKLYLQQNKITTIDDHAFQGLSSLRTLQLDQNMINCIQDQTFRPLRSL
EVLTLNNNNLSHVSPLVLRGKMPHLRTLRLHTNPIRCNCHMAWLADWLSDRPTMAVFTQC
AEPISLRGLNLASADRSEFLCNEITAQRAPTCEISSCPSACICSNGIADCRDRGLTALPA
SFPLDTTELRLEQNRIQLIPSFAFASYPQLRRIDISNNEIREIERDAFDGLTQLTSLVIY
GNRISSLPAGIFRDLRNLQMLLLNANKLTCLRRDVFNGLRSLTLLSLYDNKLQSISRGTF
SNLKSIETMHLAQNPFICDCHLRWLVSYVKKYKVETSGARCAGPRRMANKRISVAKTRRM
RCTDSSSLTGPAAECIPEAECPSQCRCEGSVVDCSRQGLVTIPDNIPPYASELILSHNRI
EMITSVGYFKKLRNLKKIDLSNNQLAAIEDGSFSGAESVLELWLNDNVLSDLRGSMFSGL
HNLRTLLIRNNHLSCIGNHTFAGLSTVRHLALYSNQITTILSGAFSTMTSLSTLNLLSNP
LDCNCHLSWLSTWLRQSHVASGNPRCAEPRFLREFPVADINPRDFRCSTDHEARAAPTCL
PVQKCPEQCTCEGTIVRCANAGLTSVPVDDIPHDVTELYLEMNDIREIPVAIKKFIYLTT
LDLSNNELASVSDWMFSNLTRLSTLLLAYNRLRCIPPKAFAGLRSLRILSLHSNELSSLP
EGAFNDLTSLSHVGFGANPWYCDCNLRWFSQWVKSDFFEAGIARCSAPPRMAGRLLLSSS
LETFVCRDPLQKCLRRYRRGRGPLDIAIAVKCNPCLSSPCQHNSTCSHHPTEYYQCTCQS
GFKGRHCEMPIDPCILEPCNNGGRCIARDEAVYTCECPVGFSGDRCEVNVDDCTPTSCPV
SNATCVDGVNEFTCKCPVGWMGNHCSEQIPDPCTLEQPCQNGGSCVLVQEIDSISYRCDC
DTGYRGVNCTDRFDPCRDHKCENAGICERNPQSAIGYQCNCQGEYRGQYCTFPMNSVDVL
QDDPCSDNDCQHGSLCYVEQGRGYSCVCLPGYTGDKCEKLVSVSFHRNGSFIKIPQPGLL
DTNFTLTVSTTQPNGVLLYDGAGGTSREHLAIEFFTGHVRVSFDLGSSPGSTIYSRVPIN
DGEAHKVELLIRDHMVSLKVDSGEAIVERMTSSMTSSSEVIGAGQFSPLFIGGIQTDLLQ
SARRLWHIRNTNSFKGCIHTFYINQTQLMFNDLIPHDDITNDIRPGCRGNEAVHSCSLER
PCLNGHCIFDQSTGPVCRCDEGFTGDRCTDRVTPCTSNACQHGTCRVDGDSYTCQCEKGF
SGRHCDTLDYCAGVDCRRGRCVSTDIGYQCVCKKRYTGRHCQTRIRPCPGTRIKQYYQVS
KVSKKSRAVGGTTICRSRRRFTNMVCSGSCPANHRRQTKRVSVFGQADAASTSCCRPMRV
QNKSIRMKCRDGTVMTHVLKKVKKCGCQSCS
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaaattttgttcttgtttacggtctgttacaacggatttacaaacgcatgcccg
aatgaatgcgtatgtcgcggcaaaacagttacttgtactggccgaagtcttacctacata
ccacgtaacataccccaagtcacagaaagactggagctacatagaaacaacataactcaa
attacaagaaatgatttatcgggacttacccatcttcgaaaactgtatctgcaacagaat
aaaatcacaacaattgacgatcacgcttttcaaggattgagctctctcaggactctacaa
ctcgaccagaatatgatcaactgcatccaagaccaaacgtttcgaccacttcgtagtctg
gaggttctaacattaaataacaacaacttatcacacgtgtcaccgttggtgcttcgagga
aagatgcctcatttgcgaactctccgactccacactaatccaatcagatgcaattgccac
atggcctggctcgctgattggctgtccgatcgtccaacaatggccgtattcacccaatgc
gctgaaccaatcagcttaagaggtttgaaccttgcctcagctgatagaagcgaattcctt
tgcaacgaaatcacagcacaacgcgcaccaacttgcgaaatatcgtcttgtccctcagcc
tgtatttgcagcaatggtattgcagattgcagggatcgtggacttactgcgctaccagct
tctttcccattagatacaactgaattgcgattggagcaaaatcgaatccaactcatccca
agttttgcattcgcttcatacccacaactacgcagaattgatatcagcaataatgagatt
cgagaaattgaaagagacgcttttgatggccttacacaactcacatcactggttatttac
gggaatcgaatttcatcacttcctgctggaatattcagagatctacggaacttacaaatg
ctgttgcttaatgcgaataaattaacatgcctaagaagagatgtcttcaacggcctacgc
tctctcacattgctgtcattatacgacaacaaactacaatcaatatcaagaggaactttc
tccaacctgaaatccatagaaacaatgcaccttgcacaaaatccgtttatatgtgattgc
cacttgcgttggttggttagttatgtgaagaaatataaagtagaaacatctggtgcacga
tgtgctggccctcgtaggatggcaaacaaaagaatatcagtggcaaagacaagaagaatg
agatgtactgattcaagcagcttaactggcccagcagcagagtgtatacctgaagcagag
tgtccaagtcaatgcagatgtgaaggttcagttgtagattgttcaagacaaggcctcgtt
acaatacctgataatattccaccttatgcatcggaattgatcttgagtcacaacagaata
gaaatgatcacaagtgttggttactttaaaaagttgcgaaacttaaagaaaattgatctt
tccaacaatcagctcgctgcaatcgaagacggttcgttctcaggagctgaaagtgttctg
gaactttggttgaatgacaacgtgttatctgatctaagaggatccatgtttagtggatta
cataacctaagaactcttttgattcgcaacaaccatctttcttgtattggaaaccacaca
ttcgctggtttatccactgtacgccatcttgccctctactccaatcaaatcactacgatt
ctcagtggagcattcagcactatgacatcactaagcacattaaatcttctatcaaaccca
cttgactgcaattgccacctttcgtggttgtccacttggttgcgccagagccacgtagct
tcggggaatccccggtgtgcagaacctcgtttcttgagggagttccccgtagctgatatc
aaccctcgtgatttccgatgtagcacggatcatgaggcgcgagctgcacctacttgcttg
cctgtgcagaagtgcccagagcaatgcacatgtgaaggtaccatagtccgatgcgcaaat
gctggtttaacatcggtgcctgttgatgatataccacatgatgttactgagttgtatctg
gagatgaatgatattcgtgaaataccagtggctatcaagaagtttatatacctcactact
ttagacctcagcaacaacgagttagcgagtgtcagtgactggatgttttccaacctaacc
cggttgtccacgttgttactcgcatacaacagactacgatgcattcctcctaaagcattt
gctggactacgatcactacgtatactttcacttcatagcaacgaactttcaagtttacct
gaaggagcttttaatgatttgacttcgttgtcgcatgttggattcggggccaacccttgg
tactgtgactgcaacctacgttggtttagtcagtgggtgaaatctgacttctttgaggct
ggaattgctagatgttctgctccaccaagaatggcgggtcgtcttttgctctcgtcatca
ctggaaacattcgtgtgtcgagatccgttacaaaagtgcctccgacgttatagacgagga
agaggacctctggacattgcaattgctgtgaaatgcaacccatgcctatcatctccatgc
caacataactctacatgcagccaccatccaactgagtactatcaatgcacttgccagtca
ggattcaaaggcagacattgtgagatgccaatagacccatgtatattggaaccttgtaat
aatggtggaagatgcattgctagagatgaagcagtttatacttgtgaatgtccggttggg
tttagtggggaccgatgtgaagtaaatgttgacgactgtactcctacctcgtgcccagtg
tcgaacgccacatgcgtggacggtgtgaatgaattcacttgtaaatgcccagttggatgg
atgggaaaccactgtagtgaacaaattcctgatccatgtacattagaacaaccatgtcaa
aacggtggatcttgcgttcttgtgcaagaaattgattctatttcttacagatgcgattgt
gacacgggatacagaggggttaactgcacagataggtttgatccgtgtcgtgaccataag
tgtgagaatgctggtatctgcgaaaggaatccacaatctgctattggatatcaatgtaac
tgtcaaggagaatacagaggtcaatattgtactttccccatgaactctgttgacgtcctt
caagatgatccatgttctgataatgattgtcaacatggttcattatgttatgttgagcaa
gggagaggatattcgtgtgtttgtctgcctgggtatactggggataaatgtgaaaaactt
gtaagtgtgagtttccaccgtaatggaagtttcattaagatcccacagcctggtttattg
gacaccaattttacgctcactgtttcgacaactcagccaaatggtgtgttattatatgac
ggggctggtggaacatctcgggaacatcttgctatcgagttctttaccgggcatgtcagg
gttagtttcgatttaggaagttcccccggttcaactatctacagtagagttcccattaat
gatggcgaagcacacaaggttgaacttttaatccgtgaccacatggtgtcactaaaggtt
gacagcggtgaagcaattgttgaacgtatgacatcatcaatgacatcatcaagtgaggtc
attggagcagggcagttttctccactttttattggtggaattcaaaccgatctccttcaa
tcagcacgaaggttgtggcacatcaggaatactaacagttttaaaggttgcatccatacc
ttctacatcaaccaaacccaactcatgttcaacgacctcatacctcatgatgacatcacc
aatgacatcagacctggttgtcgtggtaacgaggccgtgcactcttgctccctcgagcga
ccatgtttaaacggacattgtatcttcgatcaatctacgggacctgtatgtagatgtgat
gaaggattcacaggcgacagatgcacagatagagtgacaccatgtacatcaaatgcttgc
caacatggaacatgtcgtgtggatggagacagttatacctgccaatgtgaaaaaggtttc
agtgggcgacattgtgatacgttggattattgcgctggtgttgattgtagaaggggaaga
tgtgtttccactgatattggttatcagtgtgtgtgtaagaagcgttatactggaagacat
tgtcagacaaggatacgtccatgtccaggaactcgaatcaagcaatattatcaagtcagc
aaagtgagtaagaagtcacgagctgttggtggaacaaccatctgtagaagtaggagaagg
tttacgaacatggtttgctctggtagttgccccgctaatcatcgcagacaaaccaaacgt
gtttcagtatttggtcaagcagatgctgcgtctacatcatgctgtaggcccatgcgtgtg
cagaataagagtatacgaatgaagtgtagggatggcacagtaatgactcatgttctaaag
aaggttaagaaatgtggatgtcagtcttgttcttga
DBGET
integrated database retrieval system
