KEGG   Ciona intestinalis (yellow sea squirt): 100184512
Entry
100184512         CDS       T01056                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
cin  Ciona intestinalis (yellow sea squirt)
Pathway
cin03018  RNA degradation
cin03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cin00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100184512
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100184512
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cin03019]
    100184512
   03041 Spliceosome [BR:cin03041]
    100184512
Messenger RNA biogenesis [BR:cin03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100184512
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100184512
Spliceosome [BR:cin03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100184512
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 100184512
NCBI-ProteinID: XP_002128141
Ensembl: ENSCING00000007519
UniProt: F6YF45
LinkDB
Position
8
AA seq 127 aa
MLPLSLLKTAVNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDHFWRMPECY
IRGSTIKYLRIPDEVIDMVKEDSMSKGRGRVGPGRGRGKAVFGGRGRGGSGQGRGGAKKS
SRGKSRE
NT seq 384 nt   +upstreamnt  +downstreamnt
atgcttccgttatcgctgttaaaaactgccgtcaatcatccaatgttggttgagttaaaa
aatggcgaaacttacaacggtcacttagtgagttgcgataattggatgaatattaatctt
cgggaggttatttgcacttcaagggatggcgaccacttttggagaatgccagagtgttac
atcagaggaagtaccattaaatatttaagaattcctgatgaagtgattgatatggtaaag
gaagactctatgagcaaaggaaggggtcgtgtggggccaggacggggtaggggaaaagct
gtgtttggtgggagaggcagaggtggatcaggacaaggaagaggaggggcaaaaaaatct
tccagaggaaaatcaagagaataa

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