Ciona intestinalis (yellow sea squirt): 100184707
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Entry
100184707 CDS
T01056
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin02010
ABC transporters
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
100184707
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100184707
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cin02000
]
100184707
Transporters [BR:
cin02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
100184707
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_15
DrrA1-3_C
TMEM192
Motif
Other DBs
NCBI-GeneID:
100184707
NCBI-ProteinID:
XP_026691296
LinkDB
All DBs
Position
8:complement(1668946..1704743)
Genome browser
AA seq
2284 aa
AA seq
DB search
MFWKQLYLLLWKNFILRKRHPVRTIIEILWPIFLFAILVAIRKTQPIDTKGECHYPGRAM
PSAGVYPWFKSLLCDLENPCFSKMVPSEVPGQINSPENGNGNGLLNSLGGIFQLIQQNTS
VLSNPGQLNSDLQALLNLTQSVNTSRVAFSTVLTNATTYADFLTTNLSLPTATVDALLNS
TVALLQVSTLQATLQQRIVVCNPQTFQLTFQFPPTFNTTTVTNQLCNLTDAQLALLSSYT
GSSLVTIQPLGLLLNQNSTNLNEVLKRVTGYSSQLQTISGPAASLLSSSQSASGGLGLFT
GNFSFNDFCGHPHTKTTQASSLLTGGNQNLTSGLLQILTTSQSSGPINSTAFCQNLTSVL
ESNNQFKFLWQVLKPLLVGKIPYTPDTPLVRSIIKRANATFETIGIVQEFGQLWLSTNGP
ALYNLLESGATVQSLRTILNTTPLNTLATLFNTSVSNVEQLKTFLSNDYSPTDGITTWKD
LYYQLNSGILLITNVLRCVDLNKFEGYPSEWQLVDDALLRTKNKTLWGGIVFPDLTATSK
TLPKVLKYKIRQDASSVTRTTSVQRFFWRPGAESGTGRVKYYVSGFVHIQDMLEDAIVEE
FHNQHNNVTTSNTNSQNILGKYLQLMPYPCFTRDRFLEYLSGLLSLLMTLAWIYSVCIII
KNIVYEKEQRLKEVMKMMGLSNGVHWVAWFINSFILMFVSILLLLMVLKVGDVTPYSNMF
IVMLWLCCFAIATISQCFLISCFFSRANLAAACGGIIYFVLYIPYNMAYAWEDRMTLSTK
LVACLLSTVSFGYGAGYISQYEMSGDGIQFYNWNKSPDPSDGMNFLLSMLMMLVDAAIYL
ILTWYIEAVFPGQYGVPRPWNFFLHRSYWCGNTKPRDTRDSHLAFRQQSDEELKLENEPT
HLKLGVSIKNLKKVYSNGKVAVDDLSLNFYESQITAFLGHNGAGKTTTMSMLTGLFPPSG
GTAQIYGSDIRTDMDSIRHELGFCPQHNVLFGDLTVLEHLQLYAGLKGASSGKVQSEEET
DSMLRDVGLPHKKNEVSRHLSGGMKRKLSVAVAFVGGSKCVVLDEPTAGVDPYARRGIWD
LLLHYKQNRTILLSTHHMDEADLLGDRIAIISHGKLKCCGSSLFLKSCFGVGYYLTLIKE
DKEASDASPIPEKLPLPKLDEGFESSFSSKQSLTVSEAPSSSTAVSSASTPSTLHDVSFI
EPKSTHYEHMVMEMVSGAKLYEENGREITFVLPYAAQADGSYVKLFEKLDDAKVNYGLTD
TSLEEIFLNVAEQNIDEGRDENKKCCSCFPKRRKASITPASTPEFEMRRGVRARLTSRSI
SSEFSGMSTSPLVHDDQPSEVLDDSSQLELDDGSQGKGAYKVEGNKLVRQQFFALFVKRF
HHARTSPLPFIHDNDNLDTPIIQNNYNFNTPSFHTSNDNTSNSISNSASDAFVSDPSIGM
RCVKDYSVYNYNKKYITCNAQSNQEWEMDASLKALSQNSASNNTLVCSCTDKQTRVLLAE
CPSGTGGSPTPRIVTQTSNPMYNMTQRNISDWLVKTVEGFKQDRFGGLSFGAKYHSTLGS
TLSPLLQFALSNSNFTLNINPNTSNTVQSIMQRLERTENSKVWFDNNGWHSMPTWLNIMN
NAALRSLLPPTEDPREYGIAAFNHPLNFTEAEVDLAAFTQSATDTIISISVIFALAFVPA
SFVLFLIEEKVSKAKHLQFVSGVNQFIYWIANFSWDMLNYSVPAVIVIIIFLCFQTDAYV
SASNLPCLVCLLFLYGFSITPMMYPASFYFEVPSTAYVVLTCINLFIGINTSIATFILEL
LDDPNLTAVNDVLKIIFLAFPQYCLGRALIDMAINQAYADAYAAFGINSFKNPFDFDLVG
RNLLAMAIEGVVFFILTVLIQYRFFIKRDKVEDLSKIPHNSSEEDDDVAAEKQRLLKSDV
TDILRIKNLTKVYTKVGSKKRLLAVDRMCVGVPQGECFGLLGVNGAGKTTTFKMLTGDIA
PTAGDAWICDRSIMDNIREVQQNTGYCPQFEALNQLLTGREHLEFYAKLRGVPPEDISRV
AEWGIKRFGLTMYADKTAGTYSGGNKRKLSAAIAFIGCPPIVFLDEPTAGMDPLSRRFLW
GRISEAVSGGRCIVLTSHSMEECEALCTRLAIMVNGSFKCIGGPQHLKNRYGEGYTITIK
VAGNIGNLELVKSFVEESFPSSIVKESHSSMIMYQIPLEDTKLSFLFDALERNKSRLNIE
DYSVSQTTLDEVFVSFAKLQTDGLEHEYGLQRPILASEGGAENDDMVLHELTTNYSHYNP
TYVA
NT seq
6855 nt
NT seq
+upstream
nt +downstream
nt
atgttttggaaacagctttatctgttactgtggaaaaattttatactcaggaaaagacac
ccagtacgaactataatagaaatcttatggccaatttttctcttcgcaattctggtcgcc
attcgtaaaactcaaccgattgatacaaaaggagaatgtcactatccagggcgtgctatg
ccaagtgctggtgtgtatccatggtttaaaagcttactttgtgacctggagaacccttgt
tttagcaagatggtgccatcagaggtgcctggacaaatcaactcccctgaaaatggaaac
gggaatggccttttgaattctcttggtggaatatttcaactcatccagcaaaatacatca
gtgctctcaaaccctggtcaattaaacagtgatctacaagcattattgaacctcacgcag
tctgtcaacacatcacgcgtggcgttttccactgtcctcacaaatgcaacaacatatgct
gattttctcactactaacctgagtctaccgactgcaaccgtggatgcattattgaacagc
actgttgccctactacaagtaagcactctacaagcgacactccagcagcgtatagttgtg
tgtaatccacaaacctttcaacttacattccaattcccaccaacattcaatacaaccacc
gtgaccaaccaactttgtaatttaaccgacgcgcaactggcattgctgtcctcatacact
ggctcaagcttggttaccattcagccacttggacttcttcttaatcaaaattcgactaac
ctcaacgaagtattaaagagggtcactggttacagcagccagctacaaactattagtgga
cctgcagctagtttgctttcatcatcccagtcagcttctggagggttgggattatttact
ggaaatttttcatttaatgacttctgtggtcacccacatactaaaacaacacaagcctct
tccttgttaactggtggaaatcaaaacctgacgtcaggcttgcttcaaattctaacgact
tctcagtccagtggacccatcaattcaacagcattctgtcaaaatttgacctcagtcctt
gaaagcaacaatcaatttaagtttctttggcaagttctaaaaccactgttagttggaaaa
attccctacacaccggacacacccctagttcgctccataataaaaagagcaaacgcaact
tttgaaacaattggaattgttcaagagttcggacaactatggttgtcaaccaatggacca
gctctttataatttgcttgaaagtggagctacagtgcaaagtttgagaacaattttgaac
actactcctcttaacacattagccaccttgttcaacacatcagtttcaaatgtggagcaa
ttaaaaacttttctatcaaatgattacagtcctaccgatggtataacaacatggaaggac
ttgtattaccaattaaattctggaatattgctcataaccaatgttctcaggtgtgttgat
ctgaacaagtttgaaggatatcccagtgaatggcagttagtggatgatgctttattaaga
acaaagaacaaaacactatggggaggaattgtttttccggatcttacagcgacatctaaa
acccttcccaaggttttaaaatacaaaattcgccaagatgctagttcagttactagaact
accagtgtacaacgatttttttggcgacctggtgcagaaagtggcacgggccgtgtcaag
tattatgtcagcggcttcgtgcacattcaagacatgttagaagatgccatcgtagaagaa
ttccacaaccagcacaataacgtgacaactagtaataccaattcccaaaatatactcgga
aaataccttcaactaatgccttatccttgttttacaagagacagatttttggaatattta
tctggtcttctttccctccttatgaccctggcttggatatattctgtttgtatcatcatt
aagaatattgtgtatgaaaaagagcagcgcctgaaagaggttatgaaaatgatgggccta
agtaacggggtgcattgggtggcttggttcattaattcattcattctcatgtttgtttca
atacttctacttctgatggtacttaaggttggagatgtgacaccatacagcaacatgttc
attgtaatgctgtggctgtgttgctttgccatcgccacaatatcgcaatgctttctcatc
agttgctttttttccagggccaatctagctgctgcatgcggtggaatcatctactttgtc
ctttacattccatacaacatggcttatgcatgggaggaccggatgacattatcaacaaaa
ctagttgcatgtcttctgtcaactgtatcttttggttacggagctgggtatatatctcaa
tatgaaatgtcaggtgatggaattcagttttataactggaacaaaagtcccgatccctcg
gatggaatgaatttcctcctctccatgcttatgatgttggttgacgctgcaatatatctc
atactaacatggtacatcgaagcagtgtttccaggtcagtatggtgttccacgtccatgg
aacttcttcctgcatcgaagttattggtgtggcaacactaaacctagagatacaagggat
tctcatcttgctttccgtcaacaaagcgacgaagaattgaaattggaaaatgaaccaaca
catctgaaacttggagtttctataaaaaacttaaagaaagtctacagcaatggaaaagtg
gcagttgacgatttgtctcttaacttctacgaaagccagatcacggcgtttcttgggcat
aacggtgcggggaaaacgacgactatgtcgatgctcactgggttattcccacctagtggt
ggaactgcgcaaatctacggcagcgacattagaactgatatggattcaattagacacgag
ttgggcttctgtccgcaacataatgttctgtttggagatttgacagttcttgagcacctg
cagttatacgctggtttaaaaggagccagcagtggtaaggtacaaagtgaagaagaaaca
gacagcatgctacgagacgtgggacttcctcataagaagaatgaggtctctcgtcattta
tctggaggaatgaagcggaagttgtcggttgccgtagcttttgtgggtggctctaaatgt
gtggtgcttgatgaaccaactgcaggtgttgacccttatgctcgacgaggtatatgggac
ttattgttgcattacaaacaaaaccgaaccattttactttccacacatcatatggatgaa
gccgacttactcggggacagaattgccattatctctcatggcaaacttaaatgttgtggt
tcatctcttttcttgaaaagttgctttggtgttgggtattacttgacccttataaaggaa
gataaagaagcttcagatgcaagtcccatacctgagaaactaccactaccgaaacttgat
gaaggttttgagtcaagttttagttcgaaacaatccctcactgtgtccgaagctccttcc
tcttccacagcagtgtcctccgcatccactccatcaactcttcatgatgtttcattcata
gagccaaaatccacacattatgaacacatggtaatggaaatggtatctggggcaaaactt
tacgaagaaaatggacgggaaattactttcgttctaccatatgctgctcaagctgatgga
agttatgtcaagttatttgagaaattggacgatgccaaagttaactatgggttgactgat
acaagtttggaggaaatatttctcaatgttgctgaacagaatattgatgaaggaagagat
gagaataaaaaatgctgcagttgttttccaaaacgtcgcaaagcttccatcaccccagct
tcaacaccagagtttgaaatgcgacgtggagtgcgtgcccgacttacttctcggagtatt
agttcagaattttctggaatgtctacttctccgctggtacatgacgaccaaccatctgaa
gtcttagacgatagctcacaactggaacttgatgatggttctcagggcaaaggagcttac
aaagttgaaggaaataaattagttcgacaacaattttttgccctttttgtcaaaagattc
caccacgcaagaacctctcccctccctttcatacacgataatgataaccttgacaccccc
attatacaaaacaattataactttaacaccccctcctttcataccagcaatgataataca
tcaaacagcatctccaattcagcaagtgatgcatttgtaagcgacccaagcattggcatg
cggtgtgtgaaggattactcagtttataattacaacaagaaatacataacatgcaacgct
caatcaaatcaggagtgggaaatggacgcaagtctcaaagctctgagtcaaaactcagca
tccaacaacacccttgtatgttcttgcactgataaacaaaccagagtgttgcttgcagaa
tgtccgagtggaacggggggttcccctacaccgagaattgtgactcagacaagcaaccca
atgtacaacatgactcagcgaaacatatccgactggctcgttaaaacagtagaaggattt
aaacaagatagatttggaggtttatcatttggggccaaataccattctacattgggcagc
acgctctcaccactattgcagtttgcgctaagcaatagtaactttactcttaacatcaac
cctaacacatcaaacaccgtgcaatctattatgcaaaggcttgaaagaactgaaaactcc
aaggtttggtttgacaacaacggatggcactctatgccaacatggcttaacataatgaac
aacgctgcattgcgatctttactgccacctactgaggatccgagagaatacgggatcgct
gcgtttaatcatccccttaatttcactgaggcagaagtagacctggctgctttcactcag
tcagcaacggacacaatcatttcaatatccgtgatttttgctcttgcgttcgttcccgct
agttttgtacttttcctcatagaagaaaaagtcagtaaagcaaaacatcttcagtttgtc
agtggagtcaaccagttcatttattggattgcaaacttttcatgggacatgttaaactac
agtgttcctgctgtcattgtcatcataatattcctttgtttccaaacggacgcgtacgtg
tcagcatctaacctcccatgcctcgtctgtctattgttcctctatggtttctctataaca
cccatgatgtatccagcaagtttttattttgaagtcccaagcacagcatatgttgtattg
acttgcattaatctcttcattggaatcaacacaagtattgccactttcattctcgagtta
ttggatgaccctaacctcactgcagtaaacgatgtattgaagattattttccttgcgttt
ccacaatactgccttggacgtgctttgattgacatggccattaaccaagcatatgctgat
gcgtatgctgcatttggtataaactctttcaaaaatccgtttgattttgatttggttggg
aggaatttgcttgcgatggcaattgaaggggtcgtgttctttattcttactgtattgata
cagtacagattttttatcaaacgtgataaagtagaagacttgagtaagattcctcacaac
tccagtgaggaagacgacgacgtcgctgcagagaaacagaggttgcttaaatcagatgtc
acagatattttacggatcaaaaatttaacaaaagtttacacgaaagttggaagcaagaaa
cgactgttagctgtagatcgtatgtgtgttggagtaccacaaggtgaatgctttggttta
ttgggcgttaacggcgctggtaagacgaccacattcaaaatgctgactggagacattgct
ccaactgctggggatgcttggatatgtgatagaagtatcatggataacataagggaggta
caacagaataccggatactgcccgcagtttgaagcacttaatcaactacttacaggccgt
gagcatttggaattttatgccaagttacgcggcgttccacctgaagatatttccagagta
gcagagtggggaataaagagatttggactcaccatgtatgcagataaaacagcaggaacc
tacagtggtggaaacaaacggaaattatcagcggcgattgcatttattggttgtccacct
attgtatttttggatgaaccaactgctggcatggatcctctatcacgtagattcctttgg
ggtagaatatctgaagctgtgagtggaggaagatgtattgtgcttacctcccatagcatg
gaggaatgtgaagcgctttgtacaagacttgccatcatggtcaatgggagttttaagtgc
attggaggacctcagcatctgaaaaatagatatggagaaggttacaccatcacaataaag
gtagcaggcaacattgggaaccttgaacttgttaaatctttcgttgaagaatcttttcca
tcaagtattgtgaaggaaagtcacagtagcatgattatgtatcaaatcccactagaagac
acaaaactttcatttttgtttgatgctttggaacgaaacaaaagtcgattaaatattgaa
gattattctgttagccaaactacactggatgaggtctttgtaagttttgcgaagctccaa
actgatggtcttgagcatgaatacggcctccagcgtcctatattagcatcagaaggtggc
gccgaaaatgatgacatggttttgcatgagttaactaccaattactctcactacaatcca
acctatgtcgcataa
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integrated database retrieval system
