Ciona intestinalis (yellow sea squirt): 100184722
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Entry
100184722 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: RRP12-like protein
KO
K14794
ribosomal RNA-processing protein 12
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100184722
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
Other 90S particles
100184722
Pre-60S particles
Other pre-60S particles
100184722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP12_HEAT
HEAT_RRP12_N
LTN1_E3_ligase_6th
PIN_2
Motif
Other DBs
NCBI-GeneID:
100184722
NCBI-ProteinID:
XP_009860563
LinkDB
All DBs
Position
12:complement(2607783..2612194)
Genome browser
AA seq
1309 aa
AA seq
DB search
MGKPGKLKSGSKDKLKKWAKGNSSSSNPQLRTHREKAKSRFFHQQPTSKPSKGLTMEALK
IHDELGGDTTSDNSVSMDDGSSEGAPTFRTFLSGLSDCTNVTFRKIQRHWLNNSAEHKEV
CAVLAAITEIIRGQGGLESDTAYFAALVTALSSVEEVESAAAVAYLLSMTCKNVPVPVLK
AKFGEVSKLLSDILRQNAVQSDGTAPTALLRSVLSCLATILRQQDRQVWDDSSTLNTYQS
ILSYVMHSKPKIRKSAQNAVCTILCASTFVVESHQTHPACITTAQFCCSQLEKLGGITSD
PTVCHILALLGRILHCFPQSALKRSCETILRLMTLSDPVVKSVCLQAFHSMFINQSEHTT
LTPDLNAQIITALYDYHPNTSDSQICPAWLTVMEKAITNLALNYETTNKAKSLALAHIPK
LSAACFRMLLSSSTAVAESAARTINSVLKSCSSALMDTTGAGLEQEQEKFVLSMLKLVEG
GLKYKYHGVWNLVFGIYQSVFQNIARLSHYSAVKPHLVSIVDLRNAPQFQYKAELDEAMG
AAVAVFGPKLILEATPLMIDGSEKDYDFPRSWLLPLLKQYMAHGEILYFVDYFLPLAAKF
RLRSAELRQEMRDTEATTYETLLQQCWDLLPQFCRGATDLKDGFPKIARILGKALTENKD
LVLTVMQGLRNVILSCKNSPKEAEVVSRFAKNYIPILFNIYTTIDPLIEGQDMKQQLVDA
NKMKSQERLASLETIKLFLTVTDSKLICTYFSKAKQRVFDSENDNDATRLALLDIMVAMV
TYITEDQIKDVYDTLIPMXSSPNHSMQKKAYRLLEEICGSEKEACRHFVKTNLSELKIRL
LDGLSTAAPSSKGPRINCIQQVLKQLFLNPATASESKEFLAAVIPEVILCTQDAKRSRTA
AFSLLVNAANLCIDGLDDEKVKQNALDSYFELVFTGFSGSPLAMRSTIFALSRLVYEFKD
VMSSDLMSTTISNICLLLSSNTREVCKAALGFIMVLFTVLDRSTFAQYTKDILDSLLNWK
PETRRHFRFRVKKILQRLVKRFGFDTIYAMTPEQHRKQLQHIRKTEERIKKMKHEKKIAK
KDKVEDADEKKPKRETIDELLADSSDEEENDVKSKKSGKKKQSAWLQDSQEEPMDLLDSS
VSQKVLGANPKTAGGRKRKAEFKSAPDGRLLIGGEESGSDDDEDDAETDKLLLGIGVGKQ
RKSQKKMEEEDDDDEPPEKRGSYKPGGRGIHRDVEATGEKFKSKKSGGDMKKKGGVQPYA
YLPLDSSVLNKRKRKKAAGQYKGIVRAAKKGAESGAKLKSKMQKNKKHK
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaacctggtaaactgaaaagtggtagcaaggacaagttaaagaaatgggcgaaa
ggaaactccagctcttcaaacccgcaactgcgaacacacagggaaaaagcgaagtccagg
tttttccaccagcaaccaacatctaaaccaagcaaaggtctaacaatggaagctttaaaa
atccatgacgaattaggcggtgatacaacgtctgataatagtgtttctatggatgatggt
tccagcgaaggagcgccaacttttcgtacatttttgagtggtctgtccgactgtacgaac
gttacatttcggaaaattcaacgccactggctgaataactctgcagaacataaagaggtt
tgcgctgttcttgctgctattacagagatcataagaggacagggtggcttggagtcagac
accgcttattttgctgccttggtcaccgctctgtcatcagtagaagaagtagaatctgct
gctgccgttgcctatcttttatcaatgacgtgtaaaaatgttcctgtcccagttctgaaa
gcaaagtttggagaagtttcgaaacttctttcagatatcttgaggcaaaacgctgttcaa
tctgatggaactgcaccaactgcattactacgctctgtcttatcatgccttgccaccatt
ttaaggcaacaggaccgacaggtatgggatgattcgtccactttgaatacataccaatct
atactgtcatatgtgatgcattctaaaccaaaaattcgtaaatctgctcaaaatgctgtc
tgcacaatcttgtgtgctagtacatttgtagtagagtctcaccagacccaccctgcatgc
attacaactgcccaattttgctgctcacagttagaaaaacttggtgggataacatcagac
cctacagtgtgccacatcctagctttactgggtcgaatcctacattgctttccccagtca
gcactgaagcgttcgtgcgagaccattctgcgcttaatgactttgagtgaccccgttgtg
aaatcagtatgcctacaagcctttcacagtatgttcattaaccaatcagaacacactaca
ctgacccccgatctgaacgctcaaatcataaccgctctttatgattatcaccctaacacc
tcagactcccagatctgcccagcctggcttactgtcatggagaaagcaattacaaacttg
gctcttaactatgaaactaccaataaagcaaaatcattagccctagcccacataccaaaa
ttaagtgctgcctgtttccgaatgctgctatcttccagcactgcagtagcagagtccgct
gcccggaccattaattctgttttaaaatcctgttcttctgctttgatggacaccactggc
gctggtttagaacaagagcaagaaaagtttgttctctcgatgttaaaacttgttgagggc
ggtcttaaatataaataccacggcgtgtggaatttggtgtttggaatctaccaaagtgtc
tttcaaaacatagcaaggttatctcattactcagctgtaaagccacacttggtcagtatt
gtggatttaagaaatgccccgcagtttcaatacaaggctgaactagatgaagctatggga
gcagcagtggcagtgtttgggcctaaactgatacttgaagctactccactcatgatagat
ggcagtgagaaagattacgactttccaagaagttggttactcccgctgttaaagcagtat
atggcccacggagagattctatattttgtagattactttctaccccttgctgctaaattt
cgcctacggagtgccgagttgcgtcaagagatgagagacaccgaggcaacaacatacgaa
acacttctgcaacaatgttgggacctcttgccgcagttttgtcgcggggccactgatttg
aaggatgggttcccgaaaattgcaaggattttaggaaaagcgctaacagagaacaaagac
ttggttttaacagtcatgcagggtcttagaaatgtcattctttcttgtaagaattctcca
aaagaagcagaagttgtgagcagatttgcgaagaactacatccctattctattcaacatt
tacaccactattgacccacttatagagggccaggacatgaaacaacaactggtagatgca
aacaaaatgaagtcccaagagcggctagcttctttggaaacgatcaagctatttttgaca
gtgacagattctaaacttatctgtacttacttttcaaaggctaaacagcgagttttcgac
agtgagaatgataatgacgccacgagactcgctctgcttgatatcatggttgctatggtt
acctacatcaccgaagatcagattaaggatgtttatgacactctcataccaatgnttagt
tctccaaaccatagcatgcagaagaaggcatacagacttctggaagagatctgtggctct
gagaaagaagcttgtcgccattttgtcaagacaaatctctcggaactgaaaatcagatta
ctagatgggttatcgactgctgcaccctcctccaaagggccaaggatcaactgtatccaa
caggttttgaaacagttgtttttaaacccagcaactgcgagcgaaagcaaagagtttttg
gctgctgttattccagaggtgattctgtgtacccaggatgcaaaacggagtcgaacagct
gcattctcgctgcttgtcaacgcagctaacttgtgtattgatgggttagatgatgaaaaa
gtaaaacagaatgcgttggacagttattttgagcttgtgttcacagggttttcaggctcg
ccactggccatgaggtcaactatttttgctctttctcgtttggtgtacgagtttaaggac
gtcatgtcatctgatttaatgagcacaaccatctctaatatctgcttgctgttgagttca
aatacaagggaagtttgtaaagctgcacttggttttataatggttttgtttacagtactg
gacagatctacttttgctcagtacaccaaagatattttggattccctgcttaactggaag
ccggaaacgagacgacattttcgtttccgggtgaaaaagattctgcagaggttggtgaag
aggttcggattcgacacgatttatgcgatgactccggagcagcatcggaaacaacttcag
cacatcagaaaaactgaggagaggataaaaaagatgaagcatgagaagaaaatcgcgaag
aaagataaagtggaagatgctgatgagaagaaaccgaagagagagacaattgatgaactt
ttagcggattcttctgacgaagaagagaatgatgtaaaatctaagaaatctggaaagaag
aagcaaagtgcctggctccaggactctcaggaagagccaatggatcttcttgattcttcc
gtctctcaaaaagtcctcggagctaatccgaagactgcaggaggtaggaagaggaaagcg
gagttcaagagtgctccggatggtagactcctcattggaggagaggagagtggaagtgat
gatgatgaagatgatgctgagactgataaactcctccttgggatcggagttgggaagcaa
cggaagtcgcaaaagaaaatggaagaagaggatgatgatgatgaacctcctgagaagcga
ggatcttataaaccaggaggacggggcatccacagagatgtggaggcgactggtgagaag
tttaagagcaaaaagtccggaggagacatgaagaaaaagggtggtgttcaaccatacgcg
taccttcctcttgactcttctgtgcttaataagagaaaaagaaaaaaggcagctggacaa
tacaaaggaattgttcgagctgctaaaaaaggtgcagaaagcggagcaaaactgaaatcg
aaaatgcaaaaaaataaaaagcataaataa
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