Ciona intestinalis (yellow sea squirt): 100184823
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Entry
100184823 CDS
T01056
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100184823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100184823
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100184823
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100184823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
100184823
NCBI-ProteinID:
XP_002128708
LinkDB
All DBs
Position
14:complement(1486633..1489586)
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AA seq
715 aa
AA seq
DB search
MADKRKLQGEMERCYKKVTEGVETFEDIWMKLSNANNTNQKDKYESDLKKEIKKLQRLRD
QIKTWAASNEVKDKRLLLENRKLIETQMERFKVVERETKTKAYSKEGLGLAAKKDPEQKE
REETMQWLQSTIDAINRQVDMFESEIESFNSISRKKKLTADKTVRQAELVAFLEKHRYHI
RNLETLMRMLDNETISADKINIIRDDIEYYMEACQDPDYEDNEFIYEDMGLDESIVAITA
TAGSPGPGEKISNTSLNNNSSKDEDEIKSADSSPTPQNNTNHSTPSSIKEEEPRKRSKSD
DLISPHKPINNIQRQTSTTPRSMAFQPTNPITTNKPQKGPPPTAHSQPYAAAAGGMQSVT
SNHVSQTQVTASRTILPPESPSPTKKSQAQRSFESSWHGSNHSSLSEANNVEVRNAVNSI
VSSVASLSLTSNPEPATSPPVTVSNLPDLVGSVTPAPTEAPHSQTPTTNGPSLPNGPQTS
HVDLSSLKSMAEQAIANAGLEQRTVTSPPFPPHNTEPLITATNQSRPDLTSLSVVVQQQQ
TAAQQLPMGGGEARIQPLLGVAPLGPVSLSKENMYQQAMLDACWRHMPHPSDSERLRHYL
PRNPCPTPSYYHQTPLPHHDSVEFYLRLSTETLFFIFYYMEATKAQYMAAKALKKQSWRF
HTKYMMWFQRHEEPKTITDEYEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRELQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaacgaaaactgcaaggtgaaatggagcggtgttataaaaaagtaactgaa
ggcgtggagactttcgaagacatttggatgaagctatcaaatgctaacaacacaaatcag
aaggataagtatgaaagtgacctgaaaaaagaaataaaaaaattgcagaggttaagggac
caaatcaaaacgtgggcagcgtcaaatgaagtcaaagataaaaggctacttttagaaaac
cggaaattaattgaaacacagatggagcgttttaaagttgtagaaagagagacgaaaacc
aaggcgtattcgaaagaagggcttggtttagcggcgaaaaaagatccagagcaaaaggag
agagaagaaacgatgcagtggctgcaaagtacgatagatgcaattaatcggcaagtggat
atgtttgagagcgaaattgaatcttttaactcgatctcaagaaaaaagaagttgacggcc
gataaaacggtgcggcaggcggagttagtggccttccttgaaaaacatagataccatata
cggaaccttgaaaccctaatgagaatgctagacaacgagacgatatcagcggacaaaatc
aacataattagagatgatattgagtattacatggaggcatgccaggaccctgattatgaa
gataatgagttcatatatgaggacatgggattggacgaatcaattgtcgctatcactgct
acagcagggtcaccaggtcctggggaaaagatttctaacaccagtttgaataacaacagc
tcaaaagacgaggatgaaataaagtctgcagattcttcccccaccccacagaacaacacc
aatcattcaaccccttctagtataaaagaagaagagcctagaaaaagaagcaaatctgat
gaccttatttcgccccataaaccaatcaataatatacagaggcaaacgtctacaactccc
aggtccatggcttttcagcctaccaatcctattacaaccaataaaccacagaaaggtccg
cccccaacagcacatagtcagccatacgctgcagctgcaggtggaatgcaatctgtaacc
tctaatcatgtttcccagacccaagtcactgcttcaagaaccattcttccaccagagtca
ccgtcaccgacaaaaaaatcccaggcccagaggtcatttgagtcctcctggcatggtagc
aatcatagctcgttatcggaagctaataatgttgaagttagaaacgcagttaatagcatc
gtttcaagcgttgcgtctctttcgcttacttcaaatccggagccggcaacctcaccgcct
gtcactgtttcaaacttacccgacttagtgggttctgtaacccctgccccaaccgaagcc
ccacattcccaaaccccaacgacgaatggacccagcttaccaaacggccctcaaacctct
catgtcgatttatcatcattgaaaagtatggcagagcaagcaatcgcgaatgctggttta
gagcagagaaccgtaacttctcctccctttccaccacacaatacagagccgcttataacc
gcaacaaaccagtctagaccggatttaacatcattaagtgttgtggttcaacagcagcaa
acagctgctcaacaactgcctatgggtggcggagaagcaagaattcaaccccttcttgga
gttgctccattaggcccagtatcactcagtaaagagaatatgtaccagcaagcaatgcta
gatgcgtgttggaggcatatgccgcacccttcagattcagagcgtttgcgccattacctt
ccaagaaacccctgtcccaccccttcctattaccaccagacccctttaccccatcatgac
tccgtggagttttacctacggctgtcgacggagacgctcttttttattttctactacatg
gaggcaactaaggcccaatacatggcggccaaggcactgaagaagcagtcctggcgcttc
catacaaagtacatgatgtggtttcagcgccacgaagaacccaagaccatcacagatgaa
tatgagcaaggtacctacatttactttgactatgagaagtggggccagcggaaaaaggaa
ggcttcacctttgagtacaggtatttggaggaccgggagctgcagtag
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