Ciona intestinalis (yellow sea squirt): 100184859
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Entry
100184859 CDS
T01056
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03030
DNA replication
cin03410
Base excision repair
cin03420
Nucleotide excision repair
cin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100184859
03410 Base excision repair
100184859
03420 Nucleotide excision repair
100184859
03430 Mismatch repair
100184859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cin03032
]
100184859
03036 Chromosome and associated proteins [BR:
cin03036
]
100184859
03400 DNA repair and recombination proteins [BR:
cin03400
]
100184859
DNA replication proteins [BR:
cin03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
100184859
DNA Replication Termination Factors
ELG1-RFC complex
100184859
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
100184859
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
100184859
Check point factors
HRAD17(Rad24)-RFC complex
100184859
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC_C
RCF1-5-like_lid
DNA_pol3_delta2
AAA
Rad17
AAA_5
AAA_11
RuvB_N
AAA_lid_RFC1
AAA_22
Resolvase
Sigma54_activ_2
AAA_30
Rep_fac_C
Motif
Other DBs
NCBI-GeneID:
100184859
NCBI-ProteinID:
XP_002119398
Ensembl:
ENSCING00000006912
UniProt:
F6WAW7
LinkDB
All DBs
Position
9:complement(236931..241101)
Genome browser
AA seq
355 aa
AA seq
DB search
MSLWVDKYRPKSLNKLDYHLEQAENLKKLVENGDFPHLLFYGPPGAGKKTRIMCLLREVY
GSGVEKLRIEKHNFVTPSKKKLEIAALSSNYHIEVTPSDAGMHDRVVVQELIKTVAQSHQ
LESKAQKRFKVIVLTEVDRLTRDAQHALRRTMEKYMSTCRLILYCNSTSKVIPAIQSRCL
AVRVAAPSIDDVIKILTSVGKKEGHPIPQELARRIAVASKRNLRRALLMSETCRVQHVPL
TDDQTIMEPDWELYLKETANMIVSEQSPRRLLEIRNRVYELLTKCIPPDAIMRGLYKELI
HNCDGSLKPELSQLAAECEHRSHLGQKHIYHIEAFVAKFMAMYKQFIEEGLDDMF
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtgggttgacaaatatcgtccaaaatcgttaaataagcttgattaccatctc
gaacaagccgaaaatttaaagaaattggtggaaaatggagattttccgcatcttttattt
tacggaccgcctggcgctggcaagaagacccgcatcatgtgtttgttgcgcgaggtttac
ggatccggggttgaaaaactgaggattgagaaacataacttcgtcactccttctaagaag
aaacttgagattgctgccttgtcgagtaattatcatattgaggtcacaccgagtgacgcg
ggaatgcatgacagagttgtcgttcaagaattgattaaaactgtcgcccaatcccaccag
cttgaaagtaaagcgcaaaaacgattcaaggtgattgtcctcactgaggttgatcgacta
accagagatgctcagcatgcattgagaagaaccatggagaagtatatgtcaacgtgcaga
cttatattgtattgtaattcaaccagcaaggttatcccagccatccaaagtcgttgttta
gccgttcgtgtcgcggcaccaagtattgatgatgtcatcaaaatattgacaagtgttggg
aagaaggaaggtcatccgataccacaggagcttgctaggagaatcgcggttgcttcgaaa
cgaaacttacgacgagcgctattgatgagtgagacatgcagggtgcaacatgttcctttg
actgacgatcaaactattatggaacctgactgggagctttatctgaaagaaacagccaac
atgattgtatcggagcaaagccctcgtcggttgttagaaatacggaaccgagtttatgaa
ttattgacaaagtgtattccacccgatgctattatgaggggtttatacaaggaattgatc
cataactgtgacggaagtctcaaaccagagttaagtcagctggctgctgaatgtgaacat
cggagccatcttgggcagaaacatatttaccacattgaagcttttgtggcaaagtttatg
gccatgtataagcagttcatagaagaaggattggacgacatgttttga
DBGET
integrated database retrieval system
