Ciona intestinalis (yellow sea squirt): 100184998
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Entry
100184998 CDS
T01056
Name
(RefSeq) uncharacterized protein LOC100184998 isoform X1
KO
K13219
splicing factor, proline- and glutamine-rich
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cin01009
]
100184998
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100184998
03041 Spliceosome [BR:
cin03041
]
100184998
Protein phosphatases and associated proteins [BR:
cin01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
100184998
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
100184998
Spliceosome [BR:
cin03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
100184998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
NOPS
Peptidase_M54
RRM_7
Peptidase_M10
LPG_synthase_C
Reprolysin_5
Motif
Other DBs
NCBI-GeneID:
100184998
NCBI-ProteinID:
XP_018667754
LinkDB
All DBs
Position
6:1529838..1551732
Genome browser
AA seq
830 aa
AA seq
DB search
MPANRYGGGGGSGNGRYFNNNNRQDRNYQQNRRHPPNHQTPMPPPPVPPMMKNSPLPPKM
PVPVPAVDMKKEKSPAKMKVPEPVPPPSLANETGHSSRNESNDSHQNASNRPTERKFTQR
SRLFIGNLPTSITEEEFKNLFRPFGEVSETFVNAEKGFGFVRMDTRTNAERAKWELDGKV
MRSNRQLRVRFATHGAALSVKNISPFVSNELLEEAFSQFGPVERAVVVVDDRGKSMERGI
VEFARKSSATKALQQIRDGCFLLTSSPRAVVASTLEQEDTEDGLMERNVSKSQSYFQERE
APPRFAKPNSFEEEFARRWKALYDLERQQREHLEKNIQEAKEKLETEMENAIHDHQTMLM
KQDLLRRQEELQRLEEARKRELDRRQELEVARENARKKEMEGQSQRLDMLRAQIEGTYKQ
DMPPHPSMGFNHQPGFGRPGSPLMPPQLHDQLAKELMGGQGGLAPAPLIKVKSYHHIHSD
MNKLMDSLDKMSDSDQNFYRLAYEHCNNICTCKAQNYKIEDPMFERLEPCPKSFDCQSYS
HWKHSIAMSWLNRFIDGFEWKFNKLKLQLLPIGPFPDFVENFRSKDGLNLFQMLVQFLSS
FFSGSIVEMLPQLNIEDLNVRKRQHSFTGKEQYLVTDFLPFLKSHVPRDSFCVVALTWHD
LYPSEDLNFVLGQASFYHYSCVASFGRFDPTYVRGFKGRNEGIDVKDMEDISVVDAALLW
KLIKVVTHETCHVFGLAHCGTFSCLMNNSCSSEEALSQPLTLCPICMRKIQRACSKWGQD
KFPFQVKTHLASLAQYLRTVMLPLMGSNDEMTNTRVHNTLQWIDRVLNFI
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcgaatcgttacggcggcgggggaggcagtggaaacggtcgttattttaacaac
aacaatagacaagaccgaaattatcaacaaaacagacgccacccaccaaaccatcaaaca
cccatgcccccacccccagtgccccctatgatgaaaaatagccctcttccaccaaaaatg
cctgttcctgtaccagcagtggatatgaaaaaagaaaaaagtcctgcgaaaatgaaagtt
ccagagccagtaccacccccaagcttagccaatgaaacggggcattcaagtcggaatgag
tcgaatgattcacaccaaaacgcatcgaaccgaccaacagaacgtaaattcactcaacgc
agtcgtttattcattggcaatctgccaaccagtataaccgaagaagaatttaaaaacttg
tttcgtccttttggggaagtatccgaaacttttgtcaatgctgaaaaaggattcggtttt
gtaagaatggatacaaggacaaatgctgagagagctaaatgggaactggatggcaaagtt
atgcgatcgaacagacagctgcgtgtacgatttgccacacacggtgctgcacttagtgtt
aagaacatatcaccctttgtttcaaacgaacttctcgaggaagctttctcgcagtttggt
ccggttgaacgagcagtggttgtcgttgacgaccgtggaaaatcaatggagcgtggcatt
gttgaatttgcgaggaaatcttcggcaacaaaagctcttcaacaaatcagggatggctgt
ttcttactcacatcttcaccaagagcagttgtagcttcaacattggagcaggaagataca
gaagatggtcttatggagaggaatgtttcaaaatctcaatcatacttccaagagcgagag
gctcctccgaggtttgcgaaaccaaactcctttgaggaggaattcgctcgcagatggaaa
gctctttatgatctcgagcgtcagcaacgagaacatctcgaaaaaaacatccaggaggca
aaagagaaacttgaaacagagatggaaaatgcgattcatgatcatcaaactatgctcatg
aaacaagatcttctcagaagacaagaagagcttcaaagattggaggaagctcgtaagaga
gaactagatcgaaggcaggagctggaagtcgcaagagagaatgcaagaaaaaaggaaatg
gagggacagagtcaaagattggatatgctaagagctcaaattgaagggacatacaaacaa
gatatgccgcctcaccctagcatgggatttaaccatcaaccaggttttggtcgccctggt
agtccactcatgccgccacaattgcacgatcagctagctaaagaactaatgggaggacag
ggaggtctagcaccagcaccgcttatcaaagtgaagtcttatcaccatatacattctgac
atgaacaaactgatggactctctggacaaaatgtcagattcggatcaaaacttctacaga
cttgcatatgaacattgtaataacatatgtacctgtaaagcacaaaattataaaatcgag
gaccccatgtttgaacggcttgaaccttgtcccaaaagttttgactgtcagtcttattct
cattggaaacatagcatagccatgtcttggttaaatagattcattgatggttttgaatgg
aaatttaataaattgaaattacaattgttaccaattggtccttttcctgattttgttgaa
aactttcgttcaaaagatggattgaatttgtttcagatgttggtacaatttttaagttca
tttttttcagggtcaatagttgaaatgttgccccagctaaatatagaagacttgaacgtc
cgtaaaagacagcattcttttactggaaaggaacaataccttgtcacggacttcttaccg
tttcttaaatcccatgttccgcgagacagtttttgtgtcgttgcattgacctggcacgac
ctttacccaagtgaagatcttaattttgttcttggacaggctagcttctaccactactcg
tgtgttgcaagttttggtcgttttgacccaacatatgtacgtgggtttaagggtagaaat
gaaggaattgatgtgaaagacatggaagatatatctgtagttgacgcagctttactgtgg
aaactgattaaggttgtaacgcatgaaacatgccatgtgtttggtcttgcacattgtgga
acattctcttgcttaatgaacaatagttgttcttctgaagaagcgttatcccagccttta
acattatgtccaatatgtatgagaaagatacaacgtgcttgttctaaatggggccaggac
aagttcccttttcaggttaaaacacacctagcgtcgttggcacaatatctacgaacagta
atgctacctctgatgggttctaatgatgaaatgacaaatactagggtgcataatacactg
cagtggattgacagagttttaaactttatatga
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