Ciona intestinalis (yellow sea squirt): 100185116
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Entry
100185116 CDS
T01056
Name
(RefSeq) neogenin isoform X1
KO
K06766
neogenin
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
100185116
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cin04515
]
100185116
Cell adhesion molecules [BR:
cin04515
]
Immunoglobulin superfamily
DCC/UNC5 family
100185116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Ig_3
I-set
Ig_2
ig
Pur_ac_phosph_N
Ig_DSCAM-DSCAML_C
V-set
Interfer-bind
C2-set_2
DUF997
ARM_RUK
Rv3627c_N
ALMS_repeat
Motif
Other DBs
NCBI-GeneID:
100185116
NCBI-ProteinID:
XP_002120344
LinkDB
All DBs
Position
Unknown
AA seq
1239 aa
AA seq
DB search
MEFWANVCCLFILFKVASSMTSQCYNEPSDVIITREQPLLLHCLQPDSCSDITSADVTSQ
TVTWMKDGDVIPFNNIFGRRSLLGNGSLLVREPVNRVGASDSGFYSCHVKHDSVIFQSRV
AHVVVGVLGSFTKQPKSVSCTAGATVRLACKPSNAEPKPVISWFRNNSFIGNNSIMTSQA
NNTIVLPNDELEVCATMDDVGEYYCVASNIARVRKSSKVRLTLYKDDTQANISPIFVRKP
KNRSVIMGSRVYMDCLGEGEPNPVMTWYKDEIKLDFKSQSNIVRVGIGGLLIRNASSLHS
GSYTCVATNINGRSNTTAMLVVSDTYIISTTTITAFPDQVISTPCNRTPSTSHHVTSLVN
GLTLQSTSSIENQISSLATHNTLQCYANFDGSFQQRRIQLDILNKDTIYKKLLETRLNAT
QQSNDLQIHEAELGAFNITWNHTNDETKFKVFVFDAKLLTLRSIGTSDTWATFDADPNHL
IIVCVFTYTHVGVGEYNMTTSFIAPISVHTNITFDDCSSCEISGLSTMATTTSITTTWNP
CSTRHKLCPFQLIFIQPTRKTYTTRNTTITTRGLNKFTEHTLKVCVVGGRCSQQIQTTTI
QSVPDLPPPNITVVAETSSSAMIRWSQLPQNHINGILSGYKIRIRNKVNHETAFHEIPAT
EVQFLVTGLLRNTEYLMQMQAFTGAGGGPPSQKYSFRTPKRDRPESTPPGKPLSLSAQRS
STAITVQWRPPVENMFVRYYVIDWGKRAPHEASRTVDNKHRYYKISNLESSTQYFISVRA
GNNVGLGSKSLIKVRTKSAEADIEDLYPPLALNIDVLTPTTMNVSWLDSQATGKVSHYYI
IKYKTHVPSEPRVRFLNSTTLYCVIHALRPYTMYEVTVRTVSGRRRSSWSMTESAITKQS
KPTTPPTDLTVMDLNELTSVQLNWQPPDQPNGELNGYLVFYTTDPRHDIANWVIEPVVGD
KLSTVIKGLTLDTQYYIKVLARNTIGVGPYSEIIEYKTKSTPHDVKESTWVMPTWMLYVI
IGGVALLVISVVAIATLVVCRNRNVDRTKYKNRKTNGVRPPSGRNDGDGWSRNGSNIMTS
APLLHHDDIIELQSLRAGQCKCDHARTPSEIISINNGINCNHVIRDNGRNNSHYMYNGRG
TPKFARTVSPSYQDCTGDSAYSSDPPIIHYNNDVRDHSSSKLSKYKTGDCDVRRGIPQTE
YSCRNSLTNSMISDETNSDLADVEDFVRGMKTSCSSDLT
NT seq
3720 nt
NT seq
+upstream
nt +downstream
nt
atggagttttgggcgaatgtttgttgtttgtttattttatttaaagttgcttcatctatg
acatcacaatgttacaatgaaccctctgatgtcataatcacccgagaacagccattgtta
cttcattgtttacaaccggattcatgtagtgacatcacaagtgcggatgtgacatcacaa
acagttacctggatgaaagatggtgatgtcatcccgttcaacaatatcttcggacgacgg
tcgttgcttggcaacggaagtttgttggtccgagaaccggtgaaccgcgtcggggcttct
gactcggggttttattcctgccacgtaaaacatgactcagtgatatttcaaagccgagtc
gcccatgttgttgtaggggttcttggttcgttcacgaaacaaccaaagtcagtttcttgc
acagcgggggcaaccgttcgtctcgcatgcaaaccttcgaatgccgagcccaagccagtt
atatcttggtttcggaataattcgtttattggcaacaacagcattatgacatcacaagca
aacaatacgatagttttacccaatgatgagcttgaggtttgcgcaactatggacgacgtt
ggagaatattattgcgttgcttctaatattgcgagggttagaaagagttcgaaagttagg
ttaactttatataaagatgacacgcaagcaaacatatcaccaatatttgttcgtaaacca
aagaatcgttcggttattatgggctcgcgggtgtacatggattgcctcggtgaaggagaa
cctaatcctgtaatgacgtggtataaggacgagataaaacttgatttcaagtcacaatcg
aacatcgttcgtgttggcattggtgggttactgataagaaacgcatcatccctgcacagt
ggaagctacacgtgtgttgcaactaatataaatggaagatccaataccacagctatgttg
gtggtatcagacacatacattatatcaacgacgacaatcactgcgtttcccgaccaagtg
atatcaacaccatgcaatcgtacaccttccaccagccaccatgtaacttcattggtgaac
ggtttaactttacaaagcacctcttccattgaaaaccagatatcctcactcgcgacgcac
aacactttacaatgttacgcaaactttgacggaagttttcaacaaaggaggatccaactt
gatattttaaacaaagacacaatatacaagaaattattagaaactcgtctaaacgcgacg
caacaatccaacgatcttcagattcatgaagcagagctcggagccttcaatatcacatgg
aatcacaccaatgatgaaacgaaattcaaagtttttgtttttgacgccaaacttttaacg
ttgcggagtattggcacttcggacacatgggcgacgtttgatgctgatcctaaccatctt
attatagtatgtgtattcacatacacccatgttggggttggggaatataacatgacaacc
tcattcattgcaccaatcagtgtgcacacaaacattacattcgatgattgcagttcatgt
gaaatatcgggtctctcgacgatggcgaccaccaccagcatcacaaccacatggaacccg
tgttcgacgcgacataaactttgtccgttccaacttatattcattcaaccaacacggaag
acttacactacacgcaacaccacaatcacaacgaggggtttgaacaagttcactgagcat
acgttgaaggtttgtgtggttggtgggaggtgttcgcaacaaatacaaacaacaacgata
caaagtgttccggaccttcccccacctaatatcacagtagttgcggaaacaagtagctca
gccatgatacgatggtcccaacttccacaaaaccacattaatggaatactcagtggatac
aagataaggattcgtaacaaagttaatcacgagacggcgtttcatgaaatcccggcaacc
gaggttcagttcctcgtcacaggtttattgcgcaatactgagtacttgatgcaaatgcag
gcgttcactggggctggggggggaccgccgtcgcagaaatattcgtttcgtacccctaag
cgagatcggccagaatccacacctccgggaaaacccctctcgttatcggcgcaacgatcg
tcaacggcgataactgtacaatggcgaccccctgtggagaatatgtttgttcgatattac
gtgattgattggggaaagcgggctcctcacgaggcgtcgaggaccgtcgataacaaacat
cgatattataaaatatctaatctggaatcctcgacacaatacttcataagcgtacgtgcc
ggtaacaacgtcggactcgggtcaaaaagtttgattaaagttcgaacaaaaagcgcggaa
gccgatatagaagacctctacccccctctagcgttgaacattgacgtgcttacaccgacc
actatgaacgtatcatggctcgattcacaagccaccgggaaagtgtcacattattatatt
attaaatacaagacccacgtaccatctgaacctcgcgtgaggttccttaactcaacgacc
ctgtattgcgtcatccatgcgttacgaccgtacaccatgtatgaagtcactgtaaggaca
gtcagtggaagacgtagatcgagctggtcgatgaccgagtccgctatcaccaagcaaagc
aaaccaaccaccccacccactgacctcacagttatggatctcaatgaattaacatccgtg
caactgaactggcaaccccccgaccaacctaacggagaattgaatggttacctcgtgttt
tacaccaccgacccccgccatgatatcgctaactgggtgattgagcccgtggttggggac
aaactatcaacagtgatcaaggggctaacgttggacacccaatattacatcaaagttctc
gccaggaataccatcggcgtcgggccttattcagagatcattgaatataaaactaagtca
acgcctcatgatgtcaaagaatcaacatgggtgatgccaacgtggatgttgtatgttata
ataggaggtgtagctttgcttgtcatcagcgtcgttgccattgccacgctcgttgtctgc
aggaaccggaatgtagaccgaacaaagtataaaaatcggaaaacgaatggagtacggccc
cctagtggtcgtaacgacggggatggatggtcgcgcaacggaagtaatattatgacatca
gcaccattgttacatcatgatgacatcatagagttacaatcgttacgagcgggacaatgt
aaatgcgatcatgcgcgaacaccatcggagattatttcaattaacaatggaatcaattgt
aatcatgtgataagagacaatggtcgaaacaattcacattatatgtacaatggtagagga
acacccaagtttgcacgaaccgtatcaccgtcatatcaagattgcacgggcgacagcgcg
tacagcagcgatcccccaatcatacattacaacaatgacgtacgggatcattcatcgtcg
aaactaagtaaatataaaacaggtgattgtgatgtcagaaggggaattccccaaaccgag
tattcttgtcggaacagtttaaccaactcgatgataagcgacgaaacaaacagtgatctc
gccgacgttgaagattttgttcgcggaatgaaaacttcgtgctccagtgacctcacgtga
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