Ciona intestinalis (yellow sea squirt): 100185137 Help Entry 100185137         CDS       T01056                                  Name (RefSeq) vam6/Vps39-like protein   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04140   Autophagy - animal cin04142   Lysosome biogenesis cin04145   Phagocytosis cin04148   Efferocytosis Brite KEGG Orthology (KO) [BR:cin00001]  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagocytosis     100185137    04142 Lysosome biogenesis     100185137    04140 Autophagy - animal     100185137    04148 Efferocytosis     100185137  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cin04131]     100185137 Membrane trafficking [BR:cin04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     100185137 SSDB OrthologParalogGFIT Motif Pfam:  CNH Vps39_1 zf-Vps39_C Clathrin TPR_Vps41 VPS18_solenoid_2nd Beta-prop_WDR36-Utp21_1st TPR_WDR35 Scaffolding_pro Motif Other DBs NCBI-GeneID:  100185137 NCBI-ProteinID:  XP_002129290 Ensembl:  ENSCING00000006468 LinkDB All DBs Position Unknown AA seq 888 aa AA seqDB search MHDAYEAIPILERLPLAIESIAFYGLDDKEEESNAQIPNFKKLLVGTKPGHLLVYNVRGK PGGSPSHIETLLERTNRSFSKKPIQQLYVSPEFKIIISLSDGLVSVHDIHTYQLITSMQR AKGASMFAADLEEKVSLRGDAAYALRLSVAVKRKLQIYFWKNHDFIQLHNDITLPEPPKS MAWCKDSICFGFKRDFYFVKLDGNSLLQELFPTGKSMEPVIGKIGSDQLILLKDETSVFI NSEGEVVNKNSFVWSDVPLAVESEEPYVLGILPKYVEIRTLHPKRLIQSIELQKPRMVTS WRQWTFIASTTHIWSLSKVPVETQIEQLLPNKEFELALQLAKSCTEGHNENRIRHIQKLL AFDQFCRFQFNEALKTFATLNIDTSQIIGLFPNLLPSGYQKNLKYPGEVPAMKPDVLDNG LLVLIEYLTQKRNETVSIVTQQLPVVYPMVEGNSTISSKRQLLQIIDTTLLKCYLKTNDA LVAPLLRLPDNNCHVEEAERVLKQWNKQRELIELYRKKGLHRKALNLLLQESQKVKKPEN QENMIEYLQHLGQKHLDLIFHFSPGILKQNPIEGLKIFTADLAEVESLPRKKVLDFLYGV SKKLVLAYLEHVVYECNDETPEFHNRLATSYKDCVLELMEEYFKSNNEVEQLSLDKGPVE LQETRNKLLSFLEISSHYEAGRILHEFPNNKLTEERAILLGRLGRYEQALALYAHTLKDP LKAEEYCHKVYDQDPTANKDIFIHLLKMYLQPKSTTDKQFQFTPTMNLHAALRVMYEHSN KMEPAKALELLPDDVIVSNIQVFIKKVLENQTEKKHKAQVLNSLMVSESHQVHEQRIFHE SNKCVITEDRACRVCRKKIGVSAFARFPNDVVLHYFCCKDKNIQPIVS NT seq 2667 nt NT seq  +upstreamnt  +downstreamnt atgcatgatgcatatgaagcaattcctatattggagagattacctttagcaattgaaagt attgcgttttacggtctcgatgataaagaagaagagagcaatgctcaaattccaaatttt aagaaactactcgttggaacgaaacccggacatttacttgtttataacgtaagagggaaa cccggtggttccccttcccacatagaaacactattagagcgaacgaatcgatcgttttcg aaaaaaccaatccagcaactatacgtgtcacctgagtttaaaatcatcatcagtttatct gatggtttggtatccgtacatgatattcatacataccaacttataacaagcatgcagaga gctaaaggtgcttccatgttcgctgcagatttagaggagaaagtatcattacgaggggac gcagcgtatgcgttgaggttaagtgttgccgtgaaaaggaagttacaaatatatttctgg aagaatcatgactttattcagcttcataatgacatcacattaccggaacccccaaaatcc atggcgtggtgcaaagattcaatctgtttcgggtttaaacgagatttttacttcgtgaaa cttgatggaaattctttgttacaagaattatttccaaccggcaaatcaatggaaccagtc atcgggaaaataggatccgaccaacttattttattgaaggatgagacaagcgtgtttatc aatagcgagggggaggttgttaataagaattcattcgtgtggtccgatgttcctcttgct gttgaatctgaagaaccatacgtacttggtattttaccaaaatacgttgagattcggacc ctgcatcctaaacgacttatccaaagtattgaactacagaaacctaggatggttacatca tggagacaatggacgttcattgcatcaacaacccatatatggtcgttaagtaaagttccc gtagaaacacaaattgaacaacttttgccgaataaagaatttgaactcgcattacaactt gctaaatcttgtaccgagggccacaacgagaatcgtattcgtcacattcagaaattactc gctttcgatcaattttgtcgatttcaattcaacgaagctttaaagactttcgcaaccctt aatattgacacatcacaaattatcggattatttccgaacctgttaccttcgggctaccag aagaatttaaaatatcctggggaagtcccagctatgaaaccggatgtcttggataatggg ttgcttgttcttatcgagtatttaacacagaaacgaaatgaaaccgtatcgattgttacg caacaattacctgttgtttatcccatggtggaaggaaactctacgattagttcgaaacga caacttttacaaatcatagacacaacattactcaagtgttatttgaagacaaacgatgca ctcgtagcccctttgttgaggttacccgacaacaattgtcacgtggaagaagcagaaaga gttttaaaacaatggaataaacaacgagagttgattgaactttacaggaagaagggattg catagaaaagctttgaaccttctgctacaagaatcacaaaaagttaagaaaccggaaaat caagaaaatatgatcgaatatttgcaacatcttggtcagaaacatctggatctaattttc catttttctccgggaattttgaaacaaaatccgatagaaggactaaagatatttactgcg gatctagctgaagtagaaagtttgccgaggaaaaaagttttggattttctttacggggtt tccaagaaattggtgctcgcttatttggagcacgtggtatacgaatgcaatgatgaaaca ccagagttccacaacagactcgctacttcatacaaggattgtgtgttggaattaatggag gaatatttcaagtccaataatgaagtggagcaattatcattggacaaaggtccggttgaa cttcaagaaacacggaacaaattgttatctttccttgaaatatcttcgcattatgaagcg gggaggattcttcatgaatttccaaacaacaagctaacagaggagcgagccatattactt ggtaggttgggaagatatgaacaagcgcttgcgttgtacgcacacacactcaaggatcct cttaaggctgaggaatattgccataaagtttatgaccaagatcctacagctaataaggat attttcattcatttacttaaaatgtatcttcaaccaaaatctacaactgacaaacaattc caattcaccccgactatgaatctacatgcagcattacgtgttatgtacgaacattcaaat aaaatggaacctgcaaaagcattagagttactacctgatgatgtcatcgtatcaaatatt caagtttttatcaaaaaagttttggaaaaccagacggagaaaaaacataaagcacaggtt cttaattctctcatggtgtctgagagtcaccaggtccacgagcaaagaatattccacgaa agcaacaaatgtgtgataactgaggatcgcgcatgtcgtgtttgtcggaagaaaattggt gtcagcgcatttgcgaggtttccgaacgatgtcgtacttcattatttctgttgcaaagac aaaaatattcaacctattgtttcttga

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