Ciona intestinalis (yellow sea squirt): 100185145
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Entry
100185145 CDS
T01056
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04382
Cornified envelope formation
cin04512
ECM-receptor interaction
cin04518
Integrin signaling
cin04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100185145
04518 Integrin signaling
100185145
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100185145
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
100185145
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cin04147
]
100185145
00536 Glycosaminoglycan binding proteins [BR:
cin00536
]
100185145
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
100185145
Glycosaminoglycan binding proteins [BR:
cin00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100185145
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
100185145
NCBI-ProteinID:
XP_026695942
Ensembl:
ENSCING00000007847
LinkDB
All DBs
Position
Unknown
AA seq
1782 aa
AA seq
DB search
MPHRLDQIFNINCICFQAVYASAGCGGGAVTYCNATKGARGMPGLEGMPGPPGLPGYPGP
EGPVGPRGLTGKSGREGMQGPKGSRGSQGVHGYPGNPGIPGIPGQTGAPGPEGLPGCNGT
KGELGLVGPPGLDGFSGRPGPAGSKGMKGQPGEVINMVAGTKGEPGLDGLSGPQGDDGEN
GPVGPRGYIGNPGPPGPPGNDGPTGDRGEMGLGFQGEKGEKGPPGLPGPPGQSIIDESKE
TPTTDINQPVGPPGKDGLPGGKGDRGEKGERGDTGFTGLPGMKGGKGDKGEMGPLGPQST
KVGKPGTPGINGYDGSKGEPGYPGQPGRTGPKGNKGEDGESGLPGPPGYPGESGSAGKVG
PPGPTGPAGEKGSMGFPGMAGLNGLKGAAGIPGTPGDQGPRGNPGFGLQGPPGPPGPSGQ
PGLPGQPGLKGNIGEPGQPGERGLTVEGPPGQDGRPGSNGRPGLPGPTGPKGSPGTDAVI
THEIMEEMVTPGPPGQPGSPGPPGRVGSPGFPGRSGAAGPKGEECGLCPAGPKGSTGEAG
NPGTPGIPGEMGSHGAKGGKGQKGFAGFPGLPGQLGNDGPEGEIGPPGAKGEVGELNIIR
VKGDKGSPGFVGPAGLPGRSGAPGRDGLNGERGAKGSKGEIGFPGPLGLSGETGNPGIPG
APGRDGQDLPGETGEPGAKGDRGNSGGLGFPGPPGQKGEPARSRVIPGEQGEVGNTGLPG
TPGRPGEAGEKGEDGLQGYPGFAGRKGEKGSQGPAGRSVRGEPGAVGIPGETGQPGKKGS
AGRPGFDGMPGLDGLPGEKGKDAFGYPGPRGTQGSRGSPGAPGVIGEQGPPGPAGRRGPA
GPDGEDGKDGQPGFDGLTGRPGQKGEPGSARLGPIGPAGPQGETGLPGYPGSQGEPGEPG
LPGTDIVGMKGEQGSPGSEGYPGLQGVTGSPGRTGLPGLDGSAGPPGKEGPTGPQGLQGR
SGPMGFPGRKGEPGNPGLPGSDGLPGAEGSPGEDGAPGFRGPLGQKGEPAEVAAHLLQPG
EKGEQGDKGETGPAGLAGLYGYPGKKGEQGLVGEKGARGPRGLTGLDGLPGTQGEQGTPG
SPGDLGLPGPEGPPGPQGEQGTIGLPGSRGYPGLPGQKGAKSTLPGLPGVDGLPGKDGLD
GEPGMPGKDGQVGLPGRNGLPGPKGGRGNSGLMGFPGESGEKGNTGPAGERGFPGQQGLP
GIGGLEGLPGVQGEKGRTGLPGRQGLDGLPGEAGLPGDSVPGPVGLPGRQGLPGEEGMIG
LPGLPGPRGLPGLKGEMGFLGPEGPSGRQGQPGPRGATVKGEIGATGPSGPAGESGPTGP
PGLPGLPGLLGKKGEPGPTGEPGFNGFEGKPGAKGQTGLPGSTGLPGLAGFAGEQGEPGF
PGMKGRPGEPGAQGLPGLEGPPGEKGERGTTGLRGEDAQPIFREGEKGESGSPGPVGPRG
FPGQVGRQGTPGTRGQKGEIGQEGIPGLPGLAGDRGEPGPQGLVGAQGLPGEDGLPGANG
LPGTPGPSALFHGYFVTRHSQTTYVPDCPLNMRKLWDGYSLLYIQGNERSHGQDLGSAGS
CLRRFNTMPFMFCAVDNSCRVASRNDYSFWLSTPEPFPMSMEAVTGSAIEPYISRCAVCE
TPSLTIAVHSQSDLIPDCPENWISLWIGYSFVMHTGAGAEGSGQSLQSPGSCLEDFRAGP
FIECHGRGTCNQYANGYSFWLATIMPQNQFRQPISETLKAGTLRQRVSRCQVCMRGDFDT
NSNGGGGAGRGDNATFNRRRAAAHRGPSEDAGRTSSHVRHTG
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaccggttagatcaaatatttaatattaattgtatttgttttcaggctgtgtat
gcatctgctggctgtggaggtggagcagtaacatactgcaatgcaacgaaaggagcaaga
ggtatgcccggtcttgaaggtatgccaggaccccctggattacctggttaccccggacca
gaaggcccagttggaccaagaggtttaactggcaagtcaggaagagaaggaatgcaagga
ccaaaagggtcaagaggcagtcaaggtgtccacggctatcctggaaatccaggaattccg
ggtattcctggacaaactggtgcacctggtcctgaaggtttgcctggttgcaatggaacc
aagggagaattgggtcttgttggtcctccaggtcttgatggattcagtggcagacctgga
cctgctggttcaaagggtatgaagggtcaacctggtgaagttatcaatatggtggctgga
acaaaaggagaacctggacttgatggtctatctggaccacagggagatgatggtgagaat
ggtcccgttggtccccgaggttacattggaaaccctggcccacctggtcctcctggaaat
gacggacctactggagacaggggagagatgggtcttggatttcagggagagaaaggagag
aagggcccccctggtcttcctggacctccaggtcaaagtataattgatgaaagtaaagaa
acaccaaccacagatattaaccaaccagttggcccaccaggaaaagatggtttgccggga
ggtaaaggtgacagaggtgaaaagggagaacgtggagacactggttttactggacttccg
ggcatgaaaggaggcaagggtgataagggagaaatgggaccattaggaccacagagcaca
aaggttggaaagccaggaacccccggtatcaatggatatgacggttctaagggtgagcct
ggttatcccggtcaaccaggaaggacaggacctaaaggaaacaaaggagaagatggtgaa
tctggtttgcctggtccaccaggataccctggagaaagtggttctgcaggaaaagttggt
cctcctggtcccactggtccagctggtgaaaaaggttctatgggttttccagggatggcg
ggtttgaatggtctcaaaggagctgctggaattcccggtacacctggagatcaaggaccc
agaggaaatcctgggtttggtctacaaggcccgcctggaccacctggtccatctggtcaa
ccaggtcttcctggtcaacccggtcttaagggtaacattggtgagcctggtcaacccggt
gagcgtggtttgactgttgaaggaccaccaggacaagatggtcgtccaggtagcaatggt
agacctggtttacccggaccaactggacctaaaggctcaccaggcactgatgcagtgatt
acacacgaaatcatggaagaaatggttactcccgggccccctggtcagccagggtcccca
ggtccaccaggccgtgttggctctcctggattcccaggtcgctctggtgctgctggtcca
aaaggagaagaatgtggcttgtgtccagctggtcctaaaggttccactggtgaagctgga
aatcctggcacccctggtatacccggagaaatgggctcccatggtgcaaagggtgggaaa
ggccagaaaggttttgctggattccctggacttccagggcaattgggaaatgatggacca
gaaggagagattggacctcctggtgcaaagggagaagttggagaactcaatattattcgc
gtgaaaggagacaaaggatcccctggatttgttggaccagctggtttgccaggcagatca
ggagctcctggaagggatggtcttaatggagaacggggtgccaagggtagcaaaggtgaa
attggttttcctggaccacttggtctgtcgggtgaaaccggaaacccaggtattcctgga
gcacccggtcgtgatggtcaggatcttcctggagaaactggtgaaccaggagcgaaggga
gacagaggaaactcaggaggtcttgggttccctggtccaccaggacaaaagggagaacct
gcacggtcaagagttattcccggagagcaaggagaagttggtaatacaggtttacctgga
acccctggaagacctggagaagcaggagagaaaggtgaggatggtttacaaggctaccca
ggatttgctggaagaaaaggagaaaagggatcacaaggcccagctggtcgatcagttcgt
ggtgagcctggtgctgtaggtattcctggtgaaactggtcaacctggaaagaaaggaagc
gctggtaggcctggatttgatggtatgccaggcttagatggtctaccgggagaaaaagga
aaagatgcttttggataccctggtcctagaggtactcagggcagtagaggaagcccagga
gcaccaggtgtaattggtgaacaaggacctcctggaccagctggacgccgaggacctgca
gggcctgatggagaagatggaaaagatggtcaacctggatttgatggtcttactggtcga
cctggacagaagggcgaacctggtagtgcaagacttggacctattggaccagcaggacct
caaggagaaacaggattaccaggttatccgggatcacaaggtgagcctggagaaccaggt
cttcctggtactgatatagttggaatgaaaggtgaacagggtagcccaggttcagaaggt
tatcctggcttgcagggtgtgactggttcaccaggccgtactggtttacctggtttagat
ggctcagctggacctcctggaaaagagggaccaacaggtccacaaggtttgcaaggtcgc
tcgggtcctatgggtttccctggaagaaaaggtgagcctggtaaccccggtttacctggt
tctgatggtttaccaggggctgagggttcacctggtgaggatggtgcacctggtttccgt
ggtccacttggccagaaaggagaaccagctgaggttgcagctcatttgcttcaacctggt
gaaaagggagaacaaggtgataaaggagaaacgggtccagcaggtttggcaggactttat
ggttaccctggtaagaaaggtgagcaaggtttggtgggtgaaaagggagcgcgaggacca
cgtggccttactgggttagatggccttcctggaacacaaggagaacaaggtacacctggt
agtccaggagatttgggtcttcctggtcctgaagggccaccgggaccacaaggggaacaa
ggaacaattggacttcctggttctcgtgggtatcctggacttcccggacaaaaaggagca
aagagtacattgcctggattgccaggggttgatggtttacctggcaaagatggtttagat
ggtgaaccaggtatgcctggtaaagacggccaggttggtttgcctggtaggaatggtttg
ccaggaccaaaaggaggcagaggtaactctggtctcatgggattccccggtgaaagtggt
gaaaagggtaacactggtccggcgggtgaaagaggtttcccaggccaacaaggtcttcct
ggtattggaggtttggaaggtctgccaggtgttcaaggagagaagggcagaactggttta
cctggaagacagggtcttgatggtttgcccggagaggctgggttacctggtgactctgtt
cctggacctgtaggtttgcctggcagacaaggccttccaggagaagaggggatgatcgga
cttccagggttacctggaccaagaggcctgccaggacttaaaggtgaaatgggatttttg
ggacctgaaggtccttcaggaagacaaggacaaccaggacccaggggtgctacagttaaa
ggagagattggggcaactggaccatctggcccagctggagaatcaggaccaaccggacca
ccgggtcttcctggattaccaggtttattgggcaagaaaggagagcctggtccaactggt
gagcctggattcaatggtttcgaaggaaagcctggtgctaagggtcaaacgggcttacct
ggttcaaccggacttcctggtttagctggtttcgctggtgagcagggtgaacctggtttt
cctggaatgaaaggaaggcccggagaaccaggtgcacagggtctgcctggtcttgaaggt
ccacctggtgaaaaaggagaaagaggtacaaccggtcttcgcggagaggacgcacagccg
atctttagagaaggagaaaaaggagaatctggatctccaggacctgttggacccaggggt
ttccctggtcaagttggacgacaaggaacgcccggtacacggggtcagaagggtgaaatt
ggtcaggagggtatacctgggttgccgggtttggctggcgaccgtggggagcccggtcca
caaggtttggttggcgcgcaaggtctgcccggtgaagacggtcttcctggagctaacggt
cttcctggtacccccggtccatcagcacttttccatggctactttgtcactcgccacagt
caaacaacatatgttcccgattgccctctgaacatgaggaaattgtgggacggctactcc
ctgctttatattcaaggaaacgaacgttcacacggccaagatctgggttcggctggttcc
tgcttacgtagattcaatacaatgcccttcatgttctgcgccgtagacaacagttgtcgg
gtggcatcaagaaacgattattctttctggctttctacacccgagcccttccccatgtcc
atggaggcagttacaggttctgctatcgagccatacatcagcagatgcgccgtgtgtgag
actccctcgctgacaatcgctgtccacagccagtctgatctcataccagactgcccggag
aactggataagtttgtggatcggctacagttttgtcatgcacaccggagctggtgccgag
ggcagcggacaatctctgcagtcgcctggttcctgtttggaggatttcagagccgggccc
tttattgaatgtcacggacgaggtacatgtaaccaatacgccaacgggtacagcttctgg
cttgcaactatcatgccacaaaaccagttcagacaacctatctcggaaacgctaaaagcg
ggaacactgcgacaacgtgtcagtcggtgccaggtctgcatgagaggagactttgatacc
aatagcaacggtggagggggagcgggtcggggcgacaatgctacattcaacaggcgccgt
gctgcggctcatcgaggaccgtcggaggacgccggaagaacaagcagtcatgtgaggcac
accggctga
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integrated database retrieval system
