| Entry |
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| Name |
(RefSeq) collagen alpha-5(IV) chain isoform X1
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| KO |
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| Organism |
cin Ciona intestinalis (yellow sea squirt)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cin00001]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100185145
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100185145
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:cin04147]
100185145
00536 Glycosaminoglycan binding proteins [BR:cin00536]
100185145
Exosome [BR:cin04147]
Exosomal proteins
Exosomal proteins of other cancer cells
100185145
Glycosaminoglycan binding proteins [BR:cin00536]
Heparan sulfate / Heparin
Extracellular matrix molecules
100185145
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1782 aa
MPHRLDQIFNINCICFQAVYASAGCGGGAVTYCNATKGARGMPGLEGMPGPPGLPGYPGP
EGPVGPRGLTGKSGREGMQGPKGSRGSQGVHGYPGNPGIPGIPGQTGAPGPEGLPGCNGT
KGELGLVGPPGLDGFSGRPGPAGSKGMKGQPGEVINMVAGTKGEPGLDGLSGPQGDDGEN
GPVGPRGYIGNPGPPGPPGNDGPTGDRGEMGLGFQGEKGEKGPPGLPGPPGQSIIDESKE
TPTTDINQPVGPPGKDGLPGGKGDRGEKGERGDTGFTGLPGMKGGKGDKGEMGPLGPQST
KVGKPGTPGINGYDGSKGEPGYPGQPGRTGPKGNKGEDGESGLPGPPGYPGESGSAGKVG
PPGPTGPAGEKGSMGFPGMAGLNGLKGAAGIPGTPGDQGPRGNPGFGLQGPPGPPGPSGQ
PGLPGQPGLKGNIGEPGQPGERGLTVEGPPGQDGRPGSNGRPGLPGPTGPKGSPGTDAVI
THEIMEEMVTPGPPGQPGSPGPPGRVGSPGFPGRSGAAGPKGEECGLCPAGPKGSTGEAG
NPGTPGIPGEMGSHGAKGGKGQKGFAGFPGLPGQLGNDGPEGEIGPPGAKGEVGELNIIR
VKGDKGSPGFVGPAGLPGRSGAPGRDGLNGERGAKGSKGEIGFPGPLGLSGETGNPGIPG
APGRDGQDLPGETGEPGAKGDRGNSGGLGFPGPPGQKGEPARSRVIPGEQGEVGNTGLPG
TPGRPGEAGEKGEDGLQGYPGFAGRKGEKGSQGPAGRSVRGEPGAVGIPGETGQPGKKGS
AGRPGFDGMPGLDGLPGEKGKDAFGYPGPRGTQGSRGSPGAPGVIGEQGPPGPAGRRGPA
GPDGEDGKDGQPGFDGLTGRPGQKGEPGSARLGPIGPAGPQGETGLPGYPGSQGEPGEPG
LPGTDIVGMKGEQGSPGSEGYPGLQGVTGSPGRTGLPGLDGSAGPPGKEGPTGPQGLQGR
SGPMGFPGRKGEPGNPGLPGSDGLPGAEGSPGEDGAPGFRGPLGQKGEPAEVAAHLLQPG
EKGEQGDKGETGPAGLAGLYGYPGKKGEQGLVGEKGARGPRGLTGLDGLPGTQGEQGTPG
SPGDLGLPGPEGPPGPQGEQGTIGLPGSRGYPGLPGQKGAKSTLPGLPGVDGLPGKDGLD
GEPGMPGKDGQVGLPGRNGLPGPKGGRGNSGLMGFPGESGEKGNTGPAGERGFPGQQGLP
GIGGLEGLPGVQGEKGRTGLPGRQGLDGLPGEAGLPGDSVPGPVGLPGRQGLPGEEGMIG
LPGLPGPRGLPGLKGEMGFLGPEGPSGRQGQPGPRGATVKGEIGATGPSGPAGESGPTGP
PGLPGLPGLLGKKGEPGPTGEPGFNGFEGKPGAKGQTGLPGSTGLPGLAGFAGEQGEPGF
PGMKGRPGEPGAQGLPGLEGPPGEKGERGTTGLRGEDAQPIFREGEKGESGSPGPVGPRG
FPGQVGRQGTPGTRGQKGEIGQEGIPGLPGLAGDRGEPGPQGLVGAQGLPGEDGLPGANG
LPGTPGPSALFHGYFVTRHSQTTYVPDCPLNMRKLWDGYSLLYIQGNERSHGQDLGSAGS
CLRRFNTMPFMFCAVDNSCRVASRNDYSFWLSTPEPFPMSMEAVTGSAIEPYISRCAVCE
TPSLTIAVHSQSDLIPDCPENWISLWIGYSFVMHTGAGAEGSGQSLQSPGSCLEDFRAGP
FIECHGRGTCNQYANGYSFWLATIMPQNQFRQPISETLKAGTLRQRVSRCQVCMRGDFDT
NSNGGGGAGRGDNATFNRRRAAAHRGPSEDAGRTSSHVRHTG |
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| NT seq |
5349 nt +upstreamnt +downstreamnt
atgcctcaccggttagatcaaatatttaatattaattgtatttgttttcaggctgtgtat
gcatctgctggctgtggaggtggagcagtaacatactgcaatgcaacgaaaggagcaaga
ggtatgcccggtcttgaaggtatgccaggaccccctggattacctggttaccccggacca
gaaggcccagttggaccaagaggtttaactggcaagtcaggaagagaaggaatgcaagga
ccaaaagggtcaagaggcagtcaaggtgtccacggctatcctggaaatccaggaattccg
ggtattcctggacaaactggtgcacctggtcctgaaggtttgcctggttgcaatggaacc
aagggagaattgggtcttgttggtcctccaggtcttgatggattcagtggcagacctgga
cctgctggttcaaagggtatgaagggtcaacctggtgaagttatcaatatggtggctgga
acaaaaggagaacctggacttgatggtctatctggaccacagggagatgatggtgagaat
ggtcccgttggtccccgaggttacattggaaaccctggcccacctggtcctcctggaaat
gacggacctactggagacaggggagagatgggtcttggatttcagggagagaaaggagag
aagggcccccctggtcttcctggacctccaggtcaaagtataattgatgaaagtaaagaa
acaccaaccacagatattaaccaaccagttggcccaccaggaaaagatggtttgccggga
ggtaaaggtgacagaggtgaaaagggagaacgtggagacactggttttactggacttccg
ggcatgaaaggaggcaagggtgataagggagaaatgggaccattaggaccacagagcaca
aaggttggaaagccaggaacccccggtatcaatggatatgacggttctaagggtgagcct
ggttatcccggtcaaccaggaaggacaggacctaaaggaaacaaaggagaagatggtgaa
tctggtttgcctggtccaccaggataccctggagaaagtggttctgcaggaaaagttggt
cctcctggtcccactggtccagctggtgaaaaaggttctatgggttttccagggatggcg
ggtttgaatggtctcaaaggagctgctggaattcccggtacacctggagatcaaggaccc
agaggaaatcctgggtttggtctacaaggcccgcctggaccacctggtccatctggtcaa
ccaggtcttcctggtcaacccggtcttaagggtaacattggtgagcctggtcaacccggt
gagcgtggtttgactgttgaaggaccaccaggacaagatggtcgtccaggtagcaatggt
agacctggtttacccggaccaactggacctaaaggctcaccaggcactgatgcagtgatt
acacacgaaatcatggaagaaatggttactcccgggccccctggtcagccagggtcccca
ggtccaccaggccgtgttggctctcctggattcccaggtcgctctggtgctgctggtcca
aaaggagaagaatgtggcttgtgtccagctggtcctaaaggttccactggtgaagctgga
aatcctggcacccctggtatacccggagaaatgggctcccatggtgcaaagggtgggaaa
ggccagaaaggttttgctggattccctggacttccagggcaattgggaaatgatggacca
gaaggagagattggacctcctggtgcaaagggagaagttggagaactcaatattattcgc
gtgaaaggagacaaaggatcccctggatttgttggaccagctggtttgccaggcagatca
ggagctcctggaagggatggtcttaatggagaacggggtgccaagggtagcaaaggtgaa
attggttttcctggaccacttggtctgtcgggtgaaaccggaaacccaggtattcctgga
gcacccggtcgtgatggtcaggatcttcctggagaaactggtgaaccaggagcgaaggga
gacagaggaaactcaggaggtcttgggttccctggtccaccaggacaaaagggagaacct
gcacggtcaagagttattcccggagagcaaggagaagttggtaatacaggtttacctgga
acccctggaagacctggagaagcaggagagaaaggtgaggatggtttacaaggctaccca
ggatttgctggaagaaaaggagaaaagggatcacaaggcccagctggtcgatcagttcgt
ggtgagcctggtgctgtaggtattcctggtgaaactggtcaacctggaaagaaaggaagc
gctggtaggcctggatttgatggtatgccaggcttagatggtctaccgggagaaaaagga
aaagatgcttttggataccctggtcctagaggtactcagggcagtagaggaagcccagga
gcaccaggtgtaattggtgaacaaggacctcctggaccagctggacgccgaggacctgca
gggcctgatggagaagatggaaaagatggtcaacctggatttgatggtcttactggtcga
cctggacagaagggcgaacctggtagtgcaagacttggacctattggaccagcaggacct
caaggagaaacaggattaccaggttatccgggatcacaaggtgagcctggagaaccaggt
cttcctggtactgatatagttggaatgaaaggtgaacagggtagcccaggttcagaaggt
tatcctggcttgcagggtgtgactggttcaccaggccgtactggtttacctggtttagat
ggctcagctggacctcctggaaaagagggaccaacaggtccacaaggtttgcaaggtcgc
tcgggtcctatgggtttccctggaagaaaaggtgagcctggtaaccccggtttacctggt
tctgatggtttaccaggggctgagggttcacctggtgaggatggtgcacctggtttccgt
ggtccacttggccagaaaggagaaccagctgaggttgcagctcatttgcttcaacctggt
gaaaagggagaacaaggtgataaaggagaaacgggtccagcaggtttggcaggactttat
ggttaccctggtaagaaaggtgagcaaggtttggtgggtgaaaagggagcgcgaggacca
cgtggccttactgggttagatggccttcctggaacacaaggagaacaaggtacacctggt
agtccaggagatttgggtcttcctggtcctgaagggccaccgggaccacaaggggaacaa
ggaacaattggacttcctggttctcgtgggtatcctggacttcccggacaaaaaggagca
aagagtacattgcctggattgccaggggttgatggtttacctggcaaagatggtttagat
ggtgaaccaggtatgcctggtaaagacggccaggttggtttgcctggtaggaatggtttg
ccaggaccaaaaggaggcagaggtaactctggtctcatgggattccccggtgaaagtggt
gaaaagggtaacactggtccggcgggtgaaagaggtttcccaggccaacaaggtcttcct
ggtattggaggtttggaaggtctgccaggtgttcaaggagagaagggcagaactggttta
cctggaagacagggtcttgatggtttgcccggagaggctgggttacctggtgactctgtt
cctggacctgtaggtttgcctggcagacaaggccttccaggagaagaggggatgatcgga
cttccagggttacctggaccaagaggcctgccaggacttaaaggtgaaatgggatttttg
ggacctgaaggtccttcaggaagacaaggacaaccaggacccaggggtgctacagttaaa
ggagagattggggcaactggaccatctggcccagctggagaatcaggaccaaccggacca
ccgggtcttcctggattaccaggtttattgggcaagaaaggagagcctggtccaactggt
gagcctggattcaatggtttcgaaggaaagcctggtgctaagggtcaaacgggcttacct
ggttcaaccggacttcctggtttagctggtttcgctggtgagcagggtgaacctggtttt
cctggaatgaaaggaaggcccggagaaccaggtgcacagggtctgcctggtcttgaaggt
ccacctggtgaaaaaggagaaagaggtacaaccggtcttcgcggagaggacgcacagccg
atctttagagaaggagaaaaaggagaatctggatctccaggacctgttggacccaggggt
ttccctggtcaagttggacgacaaggaacgcccggtacacggggtcagaagggtgaaatt
ggtcaggagggtatacctgggttgccgggtttggctggcgaccgtggggagcccggtcca
caaggtttggttggcgcgcaaggtctgcccggtgaagacggtcttcctggagctaacggt
cttcctggtacccccggtccatcagcacttttccatggctactttgtcactcgccacagt
caaacaacatatgttcccgattgccctctgaacatgaggaaattgtgggacggctactcc
ctgctttatattcaaggaaacgaacgttcacacggccaagatctgggttcggctggttcc
tgcttacgtagattcaatacaatgcccttcatgttctgcgccgtagacaacagttgtcgg
gtggcatcaagaaacgattattctttctggctttctacacccgagcccttccccatgtcc
atggaggcagttacaggttctgctatcgagccatacatcagcagatgcgccgtgtgtgag
actccctcgctgacaatcgctgtccacagccagtctgatctcataccagactgcccggag
aactggataagtttgtggatcggctacagttttgtcatgcacaccggagctggtgccgag
ggcagcggacaatctctgcagtcgcctggttcctgtttggaggatttcagagccgggccc
tttattgaatgtcacggacgaggtacatgtaaccaatacgccaacgggtacagcttctgg
cttgcaactatcatgccacaaaaccagttcagacaacctatctcggaaacgctaaaagcg
ggaacactgcgacaacgtgtcagtcggtgccaggtctgcatgagaggagactttgatacc
aatagcaacggtggagggggagcgggtcggggcgacaatgctacattcaacaggcgccgt
gctgcggctcatcgaggaccgtcggaggacgccggaagaacaagcagtcatgtgaggcac
accggctga |
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