Ciona intestinalis (yellow sea squirt): 100185146
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Entry
100185146 CDS
T01056
Name
(RefSeq) RNA-binding protein 8A
KO
K12876
RNA-binding protein 8A
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100185146
09122 Translation
03013 Nucleocytoplasmic transport
100185146
03015 mRNA surveillance pathway
100185146
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100185146
03041 Spliceosome [BR:
cin03041
]
100185146
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100185146
Spliceosome [BR:
cin03041
]
Complex C
Other components
EJC/TREX
100185146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RRM_3
RRM_7
Motif
Other DBs
NCBI-GeneID:
100185146
NCBI-ProteinID:
XP_026691441
Ensembl:
ENSCING00000004877
UniProt:
A0A1W5BDS1
LinkDB
All DBs
Position
8:complement(319781..320647)
Genome browser
AA seq
164 aa
AA seq
DB search
MSDVLDLHEGDEDFEDEGDLGVEKLKDKAKRRKGRGLGDASNAHREEMDYDIMEVDDGVG
PQRSVEGWILFVTGIHEEAKEEDLYDAFGEYGELKNLHLNLDRRTGYIKGYALVEYETYK
EAQAALDAMNGYDLYNEKLAVDWAFVKPPAARKSRFGTGGRRRR
NT seq
495 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgttttggatttgcatgagggggatgaagattttgaggatgaaggagatttg
ggagtcgaaaagttaaaagataaagctaagcgaagaaaaggaagaggtcttggtgatgca
tctaatgctcacagggaagagatggattatgacataatggaagtagatgatggggttggt
cctcagcgatctgttgaaggatggatcctttttgtcactgggattcatgaagaagcaaag
gaagaagatctatatgatgcattcggagaatatggggagctgaagaatcttcatttaaat
ttggatcgtcgtactgggtacatcaaaggttatgctctggttgagtatgaaacatacaaa
gaagcacaggctgctctggatgctatgaatggatatgatctgtacaatgagaagttagct
gttgattgggcgtttgtaaagccgccagctgcgcgaaaatcaaggttcggcacaggaggc
agaagacgtcgttga
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integrated database retrieval system
