Ciona intestinalis (yellow sea squirt): 100185266
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Entry
100185266 CDS
T01056
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit gamma-1-like
KO
K05635
laminin, gamma 1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04512
ECM-receptor interaction
cin04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
100185266
04518 Integrin signaling
100185266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_N
EGF_laminin
EGF_LMN_ATRN
Laminin_B
SlyX
BRISC_FAM175B_helical
Peptidase_C23
DivIC
Motif
Other DBs
NCBI-GeneID:
100185266
NCBI-ProteinID:
XP_004226220
Ensembl:
ENSCING00000007177
LinkDB
All DBs
Position
7:3683337..3703364
Genome browser
AA seq
1615 aa
AA seq
DB search
MTFRHLFRMLVAVAFTAIVNARMDECRFESGRPRRCLPPFVNAAFGRTVVADNTCGTPAE
EYCLQTGVTGVTKSCHICDSSDPARRHDAQYLTDFNNEDVSTWWQSNTMLHDVQYPTMVN
LTLNLTKAFDITYVRLKFHTSRPESFAIYKKKCDNCDWQPLQYYSGSCFTTYGLDNKGIV
TGDNEQKALCTDDFSDISPLTGGNVAFSTLESRPSAYNFDRSLVLQDWVKAVAIRITLNR
INTFGDEVFRDPKVLKSYYYAVSDLSIGGRCACNGHASECYLNAEDVLTCRCQHNTAGRD
CERCADMFNDRPWARATRGDAAECRACDCNGLSETCYFDPELYRQTGHGGHCTECRDNTS
GPHCEICLPYHYRDPFNNRCVPCQCNEIGSTSQQCDVSGQCACKPGVGGASCGQCMNGFF
GLSEAGCSACRCSIAGSAEGSVCDAETGSCVCKLNVEGNNCDRCKPGSMNLQASNPFGCT
SCFCYGHSSVCEVSNHYTVKYIASDFTIGTDGWEGKDFYANPSPVTKRNNAIAMLQPDPY
YMSYFVAPAKYLGEQRFSYNQMLEFDLVLEEQPFDLDIGSGDDSRPAALASREDLVLEGA
GFRVVASITDQGNPLPTSTRQTYQFRLHEAAGFHPQISALDFQKMLNQLTSINIRSTYGR
GLNAYLDNVRLTSAERDGNGLPADWVESCEAVGYVGQFTESCDIGYTRDPSNGGEYDACV
PCNCHGHSQTCDPTTGVCECEHNTMGTHCELCADGYFSGDESRRGTPQECQPCPCPVGSA
CAMLDDGDVVCTSCPPGHAGKQCELCMDGWFGDPRGSGPCQRCMCNGNIDENAVMNCNRT
TGECLKCIHNTTGFYCDACLPGYFGKPVTNVPEERCMICECDHLGSRHMSECNARTGQCN
CLPNVEGRSCNQCRSGYWNLQSGNGCDACGCHSIGSSTGECHQETGQCACLPGVGGQRCD
QCMPNYYGLSRQGCSECNCNPDGSVSLQCADDGRCLCKDGVLGVKCNQCQENYYDIANGC
IECSACYGLVQDAVQIHRRELGKLESMTSNIGNHTNKDAQGNEDFEMALAHLNQTVHQLH
DQAQQNAEHQAALQDMIDQVNSQLEQLYMKLAVIENSVETCAATVKQADDKNAASKNDTL
GIAVALQSAQDKLDQAMDDLIASRMIAEDSLSKEDNMSRIAKEAEALANQHVIDSQAVVD
TAQEAFDTSRRAQDAVQEAIDLLETLMSTLDDMIDSENKIPGARVTRNDLIAQSDRLKSN
AEAAKNESTDLFTDAEKLVVPVVDTDDMISRSQTIRTEAQDLIPQINQLEMEYNNNYGTL
VSDKHRARELLSVTDALQDSADMMLAQVHSSYQDALEAVESGNATYHSVLNTKKSLESFD
EEINMNREKARIELNKTDSIQAKIDLANEKTNGAKAALGTARSIAVQASDKAQQALDIAG
NIQISAQEIRTDAENSHDRAAVISSSVENLSDRLASTDLKLSNAENQAQTDQTNVNAATR
AAGSAGKKATESKKRVNSVLSQLENLLDRLNAMVDVNDTEIAQLEQQYEELKNQVDSMNL
PNTISAFNAEVNRHQRTLDAYDEEIVKLEADVQNLREINASIPETCSSNKKVEQP
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttaggcatctgtttcgaatgcttgtagctgtggcgtttacagcaattgtaaac
gcaagaatggatgaatgtcgtttcgaatcgggccggccacgaaggtgccttccaccattt
gtgaatgcagcttttggccgaactgttgtagcggacaatacgtgtggtacaccagcagag
gaatattgcctccaaacaggcgtaacaggggttaccaaatcctgtcatatttgtgacagc
agcgatcccgcaagaagacacgacgctcagtatttgacggactttaacaacgaagacgtc
agtacatggtggcaatcaaacacaatgcttcacgacgtacagtaccctaccatggtcaat
ctaactctaaacttgaccaaggccttcgatataacttacgttcgcttgaaattccatacc
tcaaggcccgagagtttcgcaatttacaagaagaaatgcgacaactgcgactggcaacca
ctgcaatattactccggctcgtgttttacaacatacggacttgataacaagggcatcgtg
acgggggataacgaacagaaagcgctgtgtactgatgacttcagcgacatatctccactg
actggcggtaacgtagccttcagtacactagagagccgtccaagtgcgtacaacttcgac
aggagtcttgtactacaggactgggtgaaagcggtcgctattcgaatcaccttgaaccga
attaacacttttggagatgaagtatttagagacccgaaggttttaaagtcatattactat
gctgtatcggacttatctatcggaggaaggtgtgcgtgcaacggacacgcttcagaatgc
tacttgaacgcagaagacgtactgacgtgtcgatgtcaacataatacagctgggcgagac
tgtgaacggtgtgcagatatgtttaatgatagaccatgggcaagagcaacgcgcggagac
gccgcagaatgcagagcttgcgactgtaacgggctgtcggaaacttgctacttcgatccg
gaactttaccgacaaactggtcacggtggtcactgtacggaatgccgggacaatacttct
ggaccacactgtgagatctgcctgccttatcattacagagatccattcaacaaccgatgt
gtgccttgtcaatgcaacgaaattggttccacaagtcaacagtgcgatgtcagtggtcag
tgcgcatgcaagcccggtgtcggtggcgcctcttgtggccaatgcatgaacggatttttt
ggtttaagtgaagctggttgcagcgcgtgtcgttgttctattgctggtagcgcagaaggc
agtgtttgcgatgctgaaactggatcgtgtgtttgtaaattaaacgtcgagggaaacaat
tgcgatagatgtaaacctggatctatgaatttacaagcatccaacccgttcggatgtaca
tcttgcttctgttacggccattcttctgtatgtgaagtgtcgaaccattacaccgtcaaa
tacatagccagcgatttcacaatcggtaccgatggctgggaaggaaaagatttttatgca
aatccatcacctgttaccaagagaaataatgccatagcaatgctacaacctgatccatat
tatatgtcctattttgttgcaccagccaagtacttgggggagcagaggttcagttacaac
caaatgctggagtttgatttggttcttgaggaacaaccattcgacttggacattgggagt
ggtgatgattcaagacctgctgctcttgctagtcgagaagatttggttcttgaaggtgct
ggattccgtgtggttgcaagtattacagaccagggtaacccactaccaacttcaacaaga
caaacttatcaattccgtcttcatgaagctgctggttttcatccacaaatttccgcgttg
gatttccagaaaatgctcaaccaacttacaagcatcaacattcgttctacatacggcaga
ggattgaatgcttatttggataatgtgcgtctgacgagcgcagagagagacggaaacggg
ttaccagcggattgggtggagagttgtgaagcagttggatacgttggacaatttacagaa
agttgtgatattggttacactcgtgaccccagcaatggcggagaatatgacgcatgtgtt
ccgtgtaactgccatggccattctcaaacctgcgacccaacaacaggtgtttgtgagtgc
gagcacaacacaatgggaacgcattgcgaactctgtgctgatggttacttcagtggtgat
gaatcgcgcagaggaacaccacaagaatgccagccatgcccgtgccccgtaggatcagct
tgcgcaatgctggatgatggtgatgttgtgtgcacgagttgcccacctggacatgcgggc
aaacagtgtgagctctgcatggatggctggttcggggatccgcgtggatcaggtccttgt
caacgctgtatgtgcaacgggaatattgatgaaaacgccgtcatgaattgtaatcgaacg
acaggagagtgccttaaatgtattcacaacacaactggattttattgtgatgcatgtctg
cctggctatttcggaaaaccagtcactaatgtacctgaagaaagatgcatgatttgcgaa
tgtgaccatttgggaagcagacacatgtctgaatgtaatgcaagaaccgggcaatgcaat
tgcttgcctaatgtagaaggtcgctcctgcaaccagtgcagaagtgggtattggaatctt
caaagtggaaatggttgcgatgcatgcggctgccattctattggatcaagcacgggcgaa
tgccatcaagaaactggacagtgtgcgtgcttacctggagttggaggacaaagatgtgac
caatgcatgcccaactattatgggctctctagacaaggatgttctgagtgcaactgcaac
ccagatggtagtgtcagccttcaatgtgctgatgacggccgttgtttgtgtaaagatggt
gttcttggagttaaatgcaaccaatgtcaagagaattattatgatattgccaatggatgt
attgaatgctctgcatgctatggcctggtacaagatgctgtacaaatacacagaagggag
ttggggaaattggaaagcatgacttctaacatcggaaaccacaccaataaagatgcgcaa
gggaatgaagattttgaaatggctcttgcccaccttaatcaaacagttcaccagttacac
gatcaagctcaacaaaatgcagaacaccaagctgcgctccaagacatgatcgaccaagtg
aactctcagttggagcagctgtacatgaaacttgctgtgattgaaaacagtgtggaaact
tgtgctgcgactgttaaacaagccgatgataaaaatgctgcaagtaaaaatgatacttta
ggaattgcagtggcacttcaatctgcccaggataaattggatcaagccatggatgacttg
atcgcatcaagaatgattgctgaagacagtttgagtaaagaagacaacatgagtcgtatt
gcaaaggaagccgaggcattggccaaccaacatgtaatagatagccaagcagttgtggac
acagcacaagaagcatttgacacctcacgtcgtgcacaagatgcagtacaagaagcgatc
gatttgttggaaacattaatgtcaacattggatgatatgattgattctgagaacaagata
ccaggtgcccgcgttacaagaaatgatttgattgcgcaatcagacagattgaagagtaat
gccgaagctgcaaagaatgaatcaactgatctttttactgatgcagaaaaacttgtcgtg
ccagttgtagacactgatgatatgatttcaagatcacaaactataagaactgaagcacaa
gatttaattccccagattaaccaacttgagatggaatacaacaacaactatggtaccctt
gtttctgacaaacacagggctcgagaactgctcagtgtcacagatgctttgcaagatagt
gctgacatgatgttggctcaagtacacagttcataccaagatgctttggaagcagtagaa
agtgggaatgctacttaccactctgtgctaaatacaaagaaatcgttggaaagctttgac
gaagaaattaacatgaaccgagaaaaggcaagaatagaactgaacaaaacagattcaatt
caagctaaaattgatttggcaaatgagaaaactaatggtgcaaaagctgcgctgggaacc
gcccgttcaatcgccgtacaagcgagtgataaggcccaacaagctctagatattgctggc
aatattcaaatcagcgcacaggaaatccgaacagacgctgaaaatagccacgacagggct
gcagtgatcagttcgtctgttgaaaatctatccgacagattggcatcaactgatctcaag
ttatcaaacgctgaaaaccaggctcaaaccgatcagaccaacgtgaacgcggccactcgt
gcagctggtagtgccggtaaaaaggcaactgaaagcaagaagagagtaaactctgtttta
tcgcaactggaaaatcttctggatagattaaacgctatggtggacgttaacgatacagaa
atcgcccaattggagcaacaatacgaagagttaaagaaccaggtggacagcatgaacctt
ccaaatacgatatctgccttcaacgctgaagtgaatcgacaccaacgcactttggacgca
tatgacgaagagatcgtcaaactagaagcagatgtccagaatttgcgggaaatcaacgct
tctattccggagacttgctcgtctaacaagaaagttgagcagccgtaa
DBGET
integrated database retrieval system
