Ciona intestinalis (yellow sea squirt): 100185299
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Entry
100185299 CDS
T01056
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1-like
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100185299
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100185299
Membrane trafficking [BR:
cin04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100185299
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNH
zf-Vps39_C
VPS3_N
Clathrin
TPR_Vps41
DUF1420_C
ARS2
VPS18_solenoid_2nd
Motif
Other DBs
NCBI-GeneID:
100185299
NCBI-ProteinID:
XP_018671538
LinkDB
All DBs
Position
Unknown
AA seq
873 aa
AA seq
DB search
MALKVFDLKLVLGREHIIGDKRTCIESIETNGRNVYLGTNDGNIHHYLLNIEESRESKTV
EAIRQTVKQIGTKKSISQISAAPALNHLVVNCEGNLLLLSMLDLSVTNVAPGKLKNITSF
CVNRRPMHQNPFTVEICVAFNKKRVLQIYQVSKDSSTLMQELSLPEQPKSFSMDGKAICV
ATSTTYIIINCETGTRQELMSIGEDGMLSMVSHVGVSEFLISASNALGVFVSIDGTSNRP
PLQWSDGVFNVAVAEPYLTALNDEFVTVHSLLDNQQKQSIPLRGGNLIRSCVGGMILLCT
AKDVMVLIPVSLETQLQGLFNSGSVEAALSLVQSSKKRLSKSKYETLWSRACCMAGFIQL
AQFDFEAAKQYFLDGSMDPRELISLFPGLVPSSSSFIPSVPALHNLSNIQQVCSDDKNKL
EECKTFLAAYLEELCNTNTKPDVFYATVLVLAQLGKKETVQQIIEMKNAENQSFLETLDQ
NIVEEMVFKLKEVKCFHQLALVHLHSGDTDDAMKIWKSIVTCDISDESFPGVGFVVSELS
HRAIDAATLWKNAEWILQCDQHSGAQLFIDIFNNNNESLNVDNVVSFLHEFPIALCEYLY
HLVIVCKVQKEKLHTHIAVMFLEQVLSLHKSQEDKNSLEEARKKLQEILRFSNLYRVHLI
LNKVQEFGLFAEQVILHSKLGEHDKALEILVHNLSDPLAAKNYCIEQGEGNDKFRQQLFH
SLLSVYFSDISATRGSSGSVTAAIDILNEHPEDFNWESVLHLIPTQWSVSLIRNFLEHVL
RDRIHGCRSRKIERSLIKSEVLFLHREQHLLHSRPVVIHENRVCNVCNRTLSDSPLARYP
NGVVIHAHCCKNKYVCPVTGKLFKKPEHLCCND
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggctttgaaagtttttgatttgaagcttgtccttggacgtgaacatatcattggggat
aaacggacatgtattgagagcattgagactaacggtagaaacgtctaccttgggactaac
gatgggaacattcaccattatttgctcaacattgaagaaagcagggaatctaagacagtt
gaagctatcaggcaaactgtgaagcagataggaaccaagaagtcaatatctcaaatatct
gcggccccagctttaaatcacttggtggtaaattgtgaagggaatttacttctgttgagt
atgttggatctatctgttactaatgtagcacctggaaagctgaagaatataacctcattc
tgtgtgaatagaaggcctatgcatcaaaatccttttactgttgaaatttgtgttgctttc
aataaaaagagggttttacaaatataccaggtcagcaaagacagcagtaccctcatgcaa
gagttgtcgctacctgaacaaccaaagtctttttccatggatggtaaagctatatgtgtg
gcaacatcaactacttacattatcattaattgtgagacgggcacaagacaagaactgatg
tcaatcggggaagatgggatgcttagtatggtgtcccatgttggggtatcagagttcctt
atatcagcatctaatgcactgggtgtgtttgtgagtatagatggtacatctaataggcca
cccttgcaatggtctgatggtgtgtttaatgttgctgtggctgaaccttatcttactgca
ttaaatgatgagttcgttacagtccatagtttgttggataatcaacagaaacaatccatt
cctttaagaggtggaaaccttataaggagttgtgtgggtggtatgatactgctatgcact
gcaaaagatgtaatggttcttatccctgtgtcattggaaactcaactgcaaggtttgttc
aacagtggtagtgtagaagccgcgttgtctcttgtgcaaagctcaaaaaaacgactttca
aaatcaaagtatgaaactttatggagccgtgcttgttgtatggcaggcttcatacagttg
gctcagtttgactttgaagctgcaaagcaatatttcctggatggctccatggatccacgg
gagttgatatcattgtttccaggacttgtcccttcttcctcatcttttatcccatccgtt
cccgctcttcataatttatcaaacatccaacaagtttgtagcgatgataaaaataaatta
gaggaatgtaaaaccttccttgctgcttatctggaagaactttgcaacactaacacgaaa
cctgatgtgttttacgccacggtgcttgttctcgcacagttggggaaaaaagaaactgtc
caacagataattgagatgaaaaatgcagaaaatcaaagttttttggagactttggatcaa
aatattgttgaagagatggttttcaagttgaaggaggtaaaatgtttccatcaactcgcg
ctagtgcatttacatagtggtgatacggacgatgctatgaaaatatggaagtctattgtg
acttgcgatatttccgatgagtcgtttcctggagttggatttgtcgtttcagagttatcg
caccgagcgatagatgctgccaccctgtggaaaaacgcagaatggattttacaatgcgac
caacactcgggggcgcagttgttcatagatatcttcaataataacaatgaaagcttaaac
gtcgacaatgttgtgagttttctccatgagtttccaatcgctctctgtgaatatctttac
cacctggtgatcgtatgtaaagtacagaaggagaagcttcacacacatattgctgtaatg
ttccttgaacaagtgctgtctctacataagtcacaagaggataaaaactcccttgaagaa
gcgaggaaaaagttgcaagaaatattaaggttttcaaatctttaccgagtccatctgatc
ctaaacaaagtacaggagtttgggttattcgctgaacaagtaatcctgcatagtaagctt
ggtgagcatgacaaagcattggaaatactcgtgcataacttaagtgatccacttgctgcg
aagaactactgcattgaacaaggagagggcaatgataaatttcggcaacaacttttccat
agtttgttatccgtttatttctccgatatatcagccacacgaggcagtagtgggtccgtc
acggcagcgattgatattttaaacgaacatcctgaagattttaactgggagagcgtttta
cacttgatccccacccagtggtcagtttctttgatccgcaacttcttggaacatgtcctc
cgtgatcgcatccatggatgcaggtcaaggaagatcgaacgcagcctcataaagtctgag
gtcctcttcctccacagagagcaacatcttctccattcccgaccagttgtcattcacgag
aacagggtttgcaatgtttgcaaccgtacattatctgactctccgcttgcccgctaccct
aacggggttgtcattcatgctcattgttgtaagaacaaatacgtttgtcccgtcacagga
aagttattcaaaaaaccagaacacctgtgttgtaacgactga
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