Ciona intestinalis (yellow sea squirt): 100185360
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Entry
100185360 CDS
T01056
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100185360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100185360
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
100185360
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
100185360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
S1_RRP4
Motif
Other DBs
NCBI-GeneID:
100185360
NCBI-ProteinID:
XP_002122042
Ensembl:
ENSCING00000022734
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All DBs
Position
2:423834..424890
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AA seq
209 aa
AA seq
DB search
MEENSICIPGERLGSSEQYQPGKGTYVRHGFVFASIAGSIKKESDKSGNLPLIHVQSIHT
KQHIPQIGGIVICKMTQLTSAFAKCKIISVQGSNHTAAFRGIIRKEDVRATNRDKVEIYK
SFRPGDIVVARVLSLGDALCYLLSTAENELGVVVALSENGTAMIPLAHDQMQCPITLLKQ
FRKVARPQSKHISFPENSKSALTNESTVS
NT seq
630 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaattcgatttgtattcctggtgaaagacttggtagctcagaacaatatcaa
cctggaaaaggaacttatgtacgacatggatttgtatttgcttccattgctggaagtatt
aaaaaagaatctgataagtctggtaatctaccattaatccatgtgcaatcaattcatacc
aagcaacatatacctcagattggaggaatagtgatttgtaagatgacacaactcacttca
gcgtttgccaaatgcaaaatcatttcagttcaaggaagtaatcatactgctgcctttcgt
ggaattattcgaaaagaagatgtgcgtgcaacaaacagagacaaagttgaaatttataaa
tcatttcgtcctggagatattgtggtagcaagagttttatcacttggtgatgctttgtgt
tatcttttaagcactgctgaaaatgaacttggggtggtagttgcattgagtgagaacgga
acagcaatgattccacttgcacacgatcaaatgcagtgcccgataacactgcttaagcaa
tttcgtaaagttgcgagaccacaatctaaacacatatcttttccagaaaattctaaaagt
gcattgactaatgagtctactgtttcttga
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integrated database retrieval system
