Ciona intestinalis (yellow sea squirt): 100185486 Help Entry 100185486         CDS       T01056                                  Name (RefSeq) protein SMG7   KO K14409   protein SMG7 Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:cin00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     100185486  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cin03019]     100185486 Messenger RNA biogenesis [BR:cin03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Other surveillance factors      100185486    mRNA cycle factors     Common to processing body (P body) and stress granule      100185486 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  EST1_DNA_bind EST1 TPR_2 Motif Other DBs NCBI-GeneID:  100185486 NCBI-ProteinID:  XP_018668909 LinkDB All DBs Position 9:complement(192320..205290) Genome browser AA seq 1187 aa AA seqDB search MNACHKLLEQAEVLKKGINGWNGVSDDGSSTGEVVTNRTNLQDVYRKLLITNLEFALDKK TEQDLWNFVFKNHITALQQKLKDKSNAHRTEAQSQLSSFLDSASGFYHQLLHDLCCAFHV NIPCRVRSSKLLLLKDTSLKHGSITHQPERPSCQYMCQHCLVHLGDIARYRNQSGQAESY YRHAAQLVPSNGQPYNQLAILASASGDVLSTAFYYCRSLAVKCPFPGSGTNLRRQLSKIL GGDEPRHAKISTSELIKFLLKFHACIYLHKNESELSVMVDRLSGYLHAHLRAGSLSRQQI SHMIFLNLFSLHHLSPDGVDASGNPVVSPGGENDNVDEMKPNIRWNAMLMLAMQMLHGLL SCIPVHTDDPGDFEHPGLPAVKLTLDWLVSNASVFQQQEVSNKSRVWHQLAKILNALGSQ DKANDMEGRPLPEDYEVRGFIGLKQALNKLDFQAGLDSNMNEDMQHPCRCYRLYKLGLSV AELGGGLLVCSEEEGGTVFESLVPITPGLGVNGEVPEEVEGELEDLEPTTSPGVRTTDPQ VRRVVGKGRGTGLEDHPGGMRKKNRAPRMQHVAVQIKPDPKLKAIQEEDTYGCEGINEDG EVDSGSMGSSQESPDPHPRTGHRVTFATPQMSPPQYPPESPSPTYPEQVGVLIPGVFPDN PMQAYPHNMVVPQQMGQMYRHQVAPGNPLLQNQYPRHPMNPSYVYHHPRNMLPRQNPPFQ HVHPQRPPNPHNPPPHPADLPKPLFYPPLSNTDNFRTNNPLGVSPSEYVDPMPSVEQSLP RPTDIGLFLRGPPNPQNPTSPNMEMKRMMGAQLAPRFHNDITMAVMQKQMQDLVARNTEM KSAKLAKMNQPSRQDFAAMSQQQLFNMQQGLAGSPYDRDYDLISDPSRGLFKFMTSANLP GGGSNETSSTSSPTPGGGGGQQVSTTTCSPQAGSINNYKGTGAMLAKNPGMEIPRRPNAL PTQARNFAPNTPKQLTPTGLGHFTVVDPQPQHGDIYPRDRMGSMFGISPSSNPHLNEEMR FGRTSADQSPTSDHYAQFDRMKNLFTDLPTPSDLSTLTPNTIDPLLHQQSNKDILPDKEG GDSYKLFPDTNNSLFSSQRNRGDLRLSGPGTIGSERAAAQMNSYSPWSNPTAPPVEGKPQ ERVRGQTQEGPYMSHSFWSTPMVPSGPSALELLIQRQNHVTRDKSPP NT seq 3564 nt NT seq  +upstreamnt  +downstreamnt atgaatgcttgccacaagttgctagagcaagcagaagtgttaaagaaaggcatcaatggt tggaatggagtgtctgatgacggttcctcaacaggggaagttgttacgaaccgaactaac ttacaagatgtttatcggaagcttttgattacaaacctcgagtttgctctcgataagaaa acggaacaagatttatggaactttgtttttaagaatcacattacagcattacaacaaaag ttaaaagataaatcaaatgctcatcgtacagaagcacaaagtcagctttcctcattcctt gattcagcaagtggtttctaccaccaactcctgcatgacttatgttgtgcattccatgtt aatatcccatgcagagtcagatcatcaaaattacttttattaaaagacacttcattaaaa cacggctcaatcacccaccaacctgagcggccatcttgtcaatatatgtgccagcattgt cttgtacatctgggggatatcgcgaggtatagaaaccaaagtggacaggcggaatcatat taccgacatgcagcacaacttgtcccaagtaatggccaaccgtacaaccaactggctatt cttgcatctgccagtggggacgtgttaagcactgctttctattactgtcgaagcttggct gtgaaatgtccgttcccggggtcgggtacgaaccttagaaggcaactcagcaaaatattg ggaggtgatgagccacgtcacgccaagatctccacaagtgaattgattaagtttcttctc aagttccacgcttgtatatatctacataaaaacgagagcgagctatcggtcatggttgat cgattatcgggttaccttcacgctcatctaagagcagggtcgttgtcacgacagcagata agtcacatgatcttcttgaacttgttctcattacatcatctttcacctgatggagtggat gcaagtggcaaccctgtagtgtcccctggtggtgagaatgataacgttgatgaaatgaaa ccgaacattcgatggaacgccatgcttatgcttgcaatgcaaatgttacacggcttatta tcgtgcatccccgtgcacacggacgaccccggcgactttgagcaccccggcctccctgct gtaaagttaacacttgattggttggtttcgaacgcatccgtgtttcaacaacaagaagtt tcgaacaaatcaagagtttggcaccaacttgcgaagatcctcaacgcactgggaagtcag gataaagctaatgatatggaaggtcgtcccttacctgaagactacgaagtacgaggtttc atcggtttaaaacaagcgttgaataaacttgacttccaggctggactcgactccaatatg aatgaagacatgcaacacccatgcagatgttacaggttatacaagcttgggctctcggtc gccgaacttgggggaggtttgttggtttgcagcgaggaggaaggggggaccgtgttcgag agtttggtccctattaccccgggtttaggggtaaatggggaagtcccagaggaagtggag ggtgagctagaggaccttgaaccaactaccagccccggggttcgaaccaccgacccccag gttagaagagttgtgggtaaaggtaggggaactgggttggaggaccacccaggtgggatg cgtaagaagaaccgagccccacgtatgcaacatgtagccgtgcagattaaaccagatcca aagttaaaggcaatacaggaggaggacacatatgggtgcgaggggatcaacgaggatggc gaggtcgactcagggagcatgggatcatcccaagaatcccccgacccccatccacgtacg ggacatcgagtaaccttcgctaccccacaaatgtcacccccacaatacccccccgagagt ccgtcacccacttacccagaacaagtgggtgttctcatcccaggggttttccccgataac cccatgcaagcttacccacataacatggtggttccccaacaaatggggcaaatgtatcgg caccaagtagccccgggaaacccccttctacaaaaccagtaccctcgccaccccatgaac ccctcctatgtttaccatcaccccaggaacatgttaccccgacaaaaccccccatttcag cacgttcacccccaacgaccccctaacccacataaccccccaccccaccctgcagactta cccaaacccctattctaccccccactctccaacaccgacaacttccggaccaacaaccca ctaggtgtctcaccctcagagtacgttgaccccatgccctccgttgagcagtcgttaccc cgcccgaccgacattgggttgttccttcgagggccccctaacccccaaaaccccacctca ccaaatatggagatgaagcgaatgatgggggcccagttagccccgaggttccataatgac atcacaatggcggttatgcagaaacaaatgcaagacctcgttgcacgaaacacggaaatg aagtcagcgaagctcgcgaagatgaaccaaccatcgagacaagactttgctgcgatgtct caacaacaattgtttaatatgcaacagggtttggccggaagtccttacgaccgtgattat gacctcataagcgacccgtctcgtggattgtttaagttcatgacctcggcaaacctgcca ggtggtggcagcaacgagacgtcatccacgtcatctccaacaccaggtgggggtggaggg caacaagtatcgacgacaacatgctcgccacaagctggcagtatcaacaattataaaggt accggggcaatgctggctaagaacccgggaatggaaatccctcgtcgaccgaatgctttg cccacgcaggcgcgtaattttgcaccaaatacaccaaagcaactaacccccacagggttg ggtcacttcacggtagtcgacccccagccccaacacggagatatttaccccagggacagg atgggttccatgtttgggatttcccccagttctaacccacacctgaacgaagagatgaga tttggtcgaacgtctgccgaccaatcaccaacctccgatcattacgctcagtttgatcga atgaagaatttattcaccgacctcccgacccctagtgacctttcgaccctcacccctaac acaatcgatccattgttacatcaacaatcaaacaaagacatcctccccgacaaggaaggg ggggattcttacaaacttttccccgacacaaataactccttgttttcctcgcagagaaac agaggcgatcttcgattatcggggcccggcaccattggatcggagagggccgccgcacaa atgaactcgtattcaccctggtccaaccccacagccccacctgtggaggggaagccccag gaaagggtgagggggcaaacacaggaaggaccatatatgtcccactcgttctggtcaaca ccgatggttccatccggtccttctgcactcgagcttctcattcaacgacagaaccatgtt actcgcgataagtccccgccctga

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