Ciona intestinalis (yellow sea squirt): 100185526
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Entry
100185526 CDS
T01056
Name
(RefSeq) ATP-dependent RNA helicase DDX55-like
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100185526
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100185526
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Helicases
100185526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
UvrD-helicase
Motif
Other DBs
NCBI-GeneID:
100185526
NCBI-ProteinID:
XP_002129939
Ensembl:
ENSCING00000009622
LinkDB
All DBs
Position
9:5560783..5567361
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AA seq
592 aa
AA seq
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MSNTTWSSVCDLHDHILSTISRLGFKNMTPVQVATIPVFMKNKDVCVEAVTGSGKTLAFV
IPMLEMLMQCVGTLKKHQVGAVIVSPTRELASQIHEVIEEFLDDQHCPFTSTLLIGGTGD
IENDTNDFVENGSNIIVGTPGRISFALEKCLMLRSGVRSLEVLILDEADRLLDLGFHRTL
TTILGYLPKQRRTGLFSATQTTEVVQLMKAGMRNPVKISVKEKKQDLEFASLDQSGVTKT
PSSLQNRYTTCRACEKFNSLMNFVTKKKDEKILLFFSTCACVEYFGRAIKDLLSNDFNIL
LLHGKIKKKRLEIFSKFRKLDRGILVCTDVMARGVDIPDVDWVLQFDPPSNASAFVHRCG
RTARVGRQGNALIFLLESETSYVDFIEINQKAPMLEYQMDESSTIQWSSKLQELSIKDRA
AMERGLRAFVSFIQSYAKHECNLIFRIKDLSFGELATSFGLLRIPKMPEIKLKAVTDFVA
PVVDIDAIKYKDKAREKQRKLALKKKATEGEKPKFVSEKKKAWSGLKEKKELRRVKKEKR
RMKKEKMTFDDDELEELRKDAQLVKKLKRKEITKAEYNESMDAAEGSLNKVL
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatacaacgtggtcatcggtgtgcgatctacatgatcatattttaagcacaata
tcgcgattgggattcaaaaacatgacacctgtacaggttgccacgattcctgtgttcatg
aaaaataaagatgtttgtgttgaagcagtcactggaagtggaaaaacgctcgcctttgtt
attcctatgcttgaaatgttaatgcagtgtgttggtacactgaaaaaacaccaagttgga
gctgttattgtgagcccaacacgagagcttgcgagtcagatacatgaagtgattgaagag
ttcttggatgatcaacattgtccgttcacttccactttacttattggtggaaccggagat
attgaaaacgacaccaacgattttgttgaaaatggttccaatataattgttggaactcct
ggacgaatcagctttgcgttggagaaatgtttgatgttaagatctggtgttcgatccctt
gaagttctcatccttgatgaagcggatcgtcttcttgatcttggtttccacagaactctc
accaccatccttgggtaccttccaaagcaaaggagaactggcttgttcagtgcaacacaa
accactgaggttgttcaacttatgaaagctggaatgaggaacccggttaaaataagcgtc
aaagagaaaaagcaagatttggagtttgcatctttggaccaatctggtgttacaaagacg
ccatcatcactacagaaccgatacaccacctgccgtgcatgtgagaagtttaactctctc
atgaactttgtaacgaagaaaaaagatgaaaaaatcctcctgttcttttccacgtgtgcg
tgtgtggagtattttggtcgggctataaaagatcttctcagcaatgactttaacattctg
cttctacatggaaaaattaagaagaaacgtttggaaatttttagcaaattccgtaaactt
gacagaggtatcctggtatgcacagatgtgatggcacgaggtgtggacatccctgatgta
gattgggtgttacagtttgatccaccaagtaacgcaagtgcgttcgtgcatcgttgtggt
cgaactgcaagagttggtcgtcaaggcaacgctttaattttcctgttagaatctgaaaca
tcttatgtggattttattgagatcaaccagaaagctcctatgttggaataccaaatggat
gaaagcagcacgatacagtggtcatccaagttacaggagttgtccataaaggaccgagct
gcaatggaacgaggattgagagcatttgtttctttcattcagtcgtacgcaaaacatgaa
tgtaatcttatatttcgaataaaggatctaagttttggtgaactcgctaccagttttgga
ttgttaagaattccgaaaatgccagaaataaaactgaaggcggtaactgactttgttgct
cctgttgttgatattgatgcgattaaatacaaggacaaggctcgggaaaaacaaagaaaa
ttagcattgaagaaaaaagctacagaaggggagaaaccaaagtttgtgagtgaaaagaaa
aaagcttggtcaggtttaaaagagaaaaaagaattgcgaagagtgaaaaaagaaaaaagg
agaatgaaaaaagagaaaatgacgtttgatgatgatgagttagaagaactacgtaaagat
gctcagcttgtgaagaagttaaaaagaaaggagataacaaaagctgaatataatgaatcc
atggatgctgcagaaggcagtcttaacaaggtgttgtga
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