Ciona intestinalis (yellow sea squirt): 100185546
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Entry
100185546 CDS
T01056
Name
(RefSeq) structural maintenance of chromosomes protein 3-like isoform X1
Organism
cin
Ciona intestinalis (yellow sea squirt)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
AAA_29
Motif
Other DBs
NCBI-GeneID:
100185546
NCBI-ProteinID:
XP_002125440
Ensembl:
ENSCING00000003687
LinkDB
All DBs
Position
Unknown
AA seq
1195 aa
AA seq
DB search
MHIKRVSIQGFRSYRESTEIEPFSSRHNIIVGRNGSGKSNFFCAIQFVLSDEYNNLRAEQ
RQQLLHEGTGTRVISACVEIIFENSDNRLPIDKDEVTLRRVIGSKKDQYFLDKKMVTKND
VLNLLESAGFSRSNPYYIVKQGKINQMATAPDSYRLHLLREVAGTRVYDERKKESEVLMK
ESEMKNAKIQELLTMIEDRLATLKDEKEELAQYQKWDKTRRGLEYTIHNQELNETRGKID
LLSNKRENNSQQTKHLRAQQEEAQRRTKEFQKKLLTTNARIRQLTEEKEQSASDRQELIK
KKAQLELSSNDLAEELDSDERSMGQARSELSGLREKILKKTEEKEEIIPRFEAVEGKEKE
LERRLKISEQRRKELYAKQGRGNQFSNREERDDWITRELKTLERTIRDKETQIMNLREDI
RESKQTECELEGAISEKTVGIQEHKSTMDSLSRDSLNLKRHKDELQSQRQRLWRTETSIQ
QELDSITSEIKAKEHTLNSLIGKAAVHGTESLKKVRESFRQAGNMELVEGYKGMLIENFQ
CSPNFFTCVEVTAGGKLYNHIVTTDRIGTKYLNEMNKAKLPGEVTFLPLNKLEVRDVSYP
QTADAIPMITKMQYDDVDNEAAMKYVFGKTLICRSMEVSTQLARAHQLDCVTLEGDQVSR
RGALTGGYVDNRKSRLELHASKQSLLEQLKVKEKELLSNKEHQQQLEVESTGVMDELQKQ
ETRNKQNKDVFDKLKGDLRILKEKLQAMHRALEPKERSLASLQSHCEALKSTKLSLEEEM
GTDLLSQLSSDDQGEVDRLNDEIKLLTSEHKEMVQQRVRLESKKTSLVNLLEDNLIRRRD
QLIQEMQELSVDVRQQKLIQFRNDQRITEEQLEIIDGRLKELEEEMISLEKEENLLTTKV
EEHRVKEREWRERISDDARELEKATNKQSLLIKRREDCVRKIRDLGSVPQDAFDKYQGCN
HRQLMKKLEECNHELKKYSHVNKKALDQFVSFSEEKERLLSRKDEIDRGKEAIVHLMEHL
EHEKYEAIQFTFRQVSKNFSEVFVKLVPGGKATLIMRRGDATQDTSTQSSEQSASIVDQF
VGVGIKVSFSGKAAETREMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDPDH
RSSVANMLRELSSSAQFITTTFRPELLDSADKFYGVVYRNKVGYNAGVVSEQGGL
NT seq
3588 nt
NT seq
+upstream
nt +downstream
nt
atgcacataaagagggttagcatccaggggtttcgtagctaccgcgaatcaacggagatc
gaaccttttagttcaagacataacataattgtcggtcggaacggttctgggaaaagtaat
ttcttctgtgcgatccagtttgttctcagcgacgaatacaacaacttacgcgcagaacaa
cgacaacagttacttcacgagggcacgggtacgcgggtcatatcggcgtgcgtggaaatt
attttcgaaaattcagacaacagattgccgatcgacaaagatgaagttacgttacgtcgc
gtcatcggatcgaagaaagatcagtatttcctcgataaaaagatggttacgaagaacgac
gttcttaacttgttggaatcggccggtttttcccgaagtaatccctattatattgttaag
caggggaagatcaaccaaatggcaacggcacccgattcgtatcgactacatttacttcgg
gaagtggccgggacgagggtttatgatgagaggaaaaaagaaagtgaagttttgatgaag
gaatccgagatgaaaaacgcaaagatccaggaattgttaacgatgattgaagatcgactc
gcgacgttgaaagacgagaaagaagagttggcccagtaccagaagtgggacaagacacga
cgagggttggaatatacgatacataatcaagagttgaatgaaacgagaggaaaaattgat
ctgttatcgaacaagcgtgagaataactctcaacaaacgaaacacttacgtgcccaacaa
gaagaggcgcaacgtagaacgaaggaattccaaaagaaattattgacgacaaacgcgagg
ataagacaactaacagaggaaaaagaacaatcggcatcggatcgtcaggaacttatcaag
aaaaaggcacaacttgagttatcgagcaacgacctcgctgaggaactcgactccgacgaa
aggtcaatgggtcaagcaaggtcggagttatccggacttcgggagaaaatattgaagaag
acggaagaaaaagaagaaattattccgaggtttgaggcggtggaaggaaaggagaaggag
ctggaacgaaggttaaaaatatcggaacaacgtcgcaaggaattgtacgcgaagcaaggg
cggggaaaccagttcagtaatcgtgaggaacgcgacgattggataacgagggagttaaag
acgttggaacgaacaatacgcgataaagaaacgcaaatcatgaacttacgtgaagatata
agggagagcaaacaaaccgaatgtgaattggagggggcgatatcggaaaagacagtcggg
atccaggaacataaatctacgatggattcgttgagccgtgactcgcttaatttgaaacgg
cataaagatgaactacaaagtcaacgccaacggttgtggagaactgaaacatcgatccag
caagaattagactcgataacgagcgagattaaagcgaaggaacacaccctcaactccctg
ataggaaaggcagcggtgcacggaaccgaaagtttgaagaaagttcgtgaaagtttccga
caagcggggaacatggagctggtggagggctacaaggggatgcttatcgagaactttcaa
tgctcgccaaacttcttcacatgcgttgaggtaacagcagggggaaagttatacaatcat
attgttacgaccgatagaatcggaacaaaatatttgaacgagatgaacaaagcaaagttg
cccggggaggttacgttcctaccgcttaataaactggaggtacgtgatgtgagttacccc
caaacagcggacgcgataccgatgataactaagatgcaatacgacgatgtggacaacgag
gcagcaatgaaatatgtgttcggcaaaacattgatttgtcgttctatggaagtttccacg
caacttgcgagggctcatcaactcgactgtgttacgctggagggtgaccaagtatcacga
cgaggagcgttgacgggaggttacgtcgataatcggaaatctcgacttgaacttcacgcg
tctaaacaaagtttgttggaacaactgaaagttaaggagaaagaattgttgtcgaataaa
gaacaccagcagcagctggaggtggaaagcactggtgtgatggacgaattacaaaagcaa
gaaacaaggaacaaacagaacaaggatgtttttgataaattgaagggagatcttcgtatt
ttgaaggagaagttgcaagcgatgcatcgggcgctggaacccaaggaaagatcgttagcg
agcttacaaagtcattgtgaagctctaaagtcgaccaagttgtcgttagaagaggaaatg
ggtacggacttgttgtcgcaattatccagtgatgaccagggggaagttgatcgacttaat
gatgaaattaaactgttaacgagcgaacacaaagaaatggtccaacaacgagttcgactc
gaaagtaaaaagacgagtctcgtcaatttgttggaggataacttgattcggagacgagac
caacttatacaggagatgcaagaattatcggtcgacgttcgacaacaaaagttgattcag
tttcgaaacgatcaacggatcaccgaggaacaattagagattattgacggaaggctcaaa
gaacttgaggaggaaatgataagtttggagaaagaggagaatttgttgacaacgaaagtt
gaggagcatcgggtgaaggaacgagagtggagggagagaatatcggacgatgctcgggag
ttggaaaaagctacgaataaacaaagtttgttgatcaagagacgagaggattgcgttcgt
aagataagggacctcggatcggttcctcaagatgcttttgataaataccaagggtgtaat
catagacagttgatgaagaaattggaagaatgcaaccacgagttaaagaaatattcgcac
gtaaacaagaaagctttggatcagtttgtttcgttctccgaggaaaaagaaagattatta
tcgaggaaagatgaaattgatagaggcaaggaagcgatcgtccacttgatggaacatttg
gagcacgagaaatatgaggccatccagttcacatttagacaggtgtccaagaactttagc
gaggtgttcgtaaagttggtgccggggggaaaagctactttaataatgagacgaggtgat
gcaacgcaagacacttcaacgcaatcatcggaacaatcagcgtccattgttgatcagttt
gttggggttggaataaaggtttcattttccggcaaagctgctgaaacacgggagatgcaa
caattgtcaggtggtcagaaatcgttggttgcgttggcattaatatttgcaatacagaaa
tgtgacccggcaccgttttatttatttgatgaaatcgatcaagcgcttgatcccgaccac
aggtcatcagtggcaaacatgttgcgcgaattaagttcatcggctcaatttataacgacg
acctttcgtccggaacttctcgattcggccgacaagttttatggggttgtgtatcggaac
aaggtgggttataatgcgggggttgtatcggaacaaggtgggttatga
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