Ciona intestinalis (yellow sea squirt): 100185568
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Entry
100185568 CDS
T01056
Name
(RefSeq) protein strawberry notch homolog 1 isoform X2
KO
K26273
protein strawberry notch
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
100185568
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
100185568
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
100185568
NCBI-ProteinID:
XP_002127283
Ensembl:
ENSCING00000004320
LinkDB
All DBs
Position
4:1571388..1589431
Genome browser
AA seq
1571 aa
AA seq
DB search
MDKQKEDNSQDLLSAALSQSGLMNFESPVLNQPNTQLQSNTVNFKECELLTALKTEQNKA
PIPPHNPPQVKMISSNSILTSSSASIVTLAPQNIVHHKTLPNTSGARTVTKINGPKIIKI
PALKAGSIIKINKFGKADIIQRVKGNVVQNGLNTLNKESINTDGAKQVTIASSLPTTIIR
NTALDSKPQLPKTIFLPAKDSAHSNVISTTRAGTPPISTLRNPQKTAIISSIPPSTVRLS
RSASFNVPIQRTQQIISTQIPAVPQTNKSQSSCNLGSLFVETVEKSASFNAPHSPFSLVL
PEPNTQTTSQSLSHFFTTNITSSDVSKSHSIYASPSLQRNIPPTVVPPTIHIPQPTPDTG
QGTVRFYGKGLALRTLSMPALKPGEELAAEEEREEEAEMQHTHTYALYMPSKLNIGHPHP
DSVVETSSLSSIMPPDIKYQLSIPQYTIDHCLLSALQLESVVYACQKHQMFLPNGERAGY
FIGDGPGVGKGRTVAGVIYENYLLGRKRALWFSVSNDLKYDAERDLRDIGAKNIKVYSLN
KFKYGKITAKNNGAAKKGVIFGTYSSLIGESHQQGKYGTRLKQILNWVGEDFDGVIIFDE
CHKAKNLVPSGSGKSTKTGHTVLQLQTHLPNARVVYASATGASEPKNMAYMSRLGLWGSG
TPFPQFTDFIQAVERRGVGAMELVAMDMKLRGSYIARQLSFYGVSFRIEEVPLNNSFISM
YNKAVKLWMLARAAFQAAASMIEAEYHMKKSMWAQFWSAHQRFFKYLCLSAKVDYTVSLV
REAVKHGKCVVIGLQSTGESRTLDQLEKCNGELDDFVSTAKAVFETLIENHFPAPDRKRV
TAVLGRDFYKKEEPAAVAAEKKAVKRKRVNGFSNSSKRHRGSNSSDAASSSESDDDLLSA
SDEDDLPTSSSDEDIHKIFGEPSDSEDWEKSERKRNKNEHKLKNKSKHNNNNGVKHEDGD
HSSTNHVTKSTNEKKEDASVVLKSLDSVSGTLISSLPGMGPIEQAQALKSELLEKLETLG
SCLPNNMLDELIDSLGGPENVAEMTGRKGRVIATDEGNVEYQTRAESDVPVELLNMTEKQ
RFMDGEKNIAIISEAASSGISLQADKRARNQRRRLHITLELPWSADRAIQQFGRTHRSNQ
VNAPEYVFVITELAGEHRFASVVAKRLESLGALTHGDRRATESRDFSKYNYDNKYGRKAL
ELVLKSIAGYEMPIVPPPKNYKGNFFKDMEQALQGVGLIMHEPGQVHYQLDKDYNNIFKF
MNRMLGMEVEHQNGLFLFFTQTLNAIVQDAKRSGQFDQGIVDLGAENQIVEVLKTKEFPI
MCGGRVSLQSVQIERGISWVDALRIFEDGSIGSSSGFYVTLTQRNGKHMVILIIESTSQR
HRGPATFVVYRPNTGKQVRKETLEDLKKKYKRVESDEAEVWWCKHHEASLDQCSHRFWQG
SCSKGNSLCHIGKRRRMYHVLAGSVLAVWRTVEEVLLMEGGSKYKMQVVRLKTQEGNRIV
GVLIPTICVTSLMAALNREAESIPISNNVVQNFPQQLNEFSSDDSDDYEDVEPDEMLSSV
LAPKSNVVWQL
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacaaaaagaagacaattcgcaagatttgttatctgccgctctaagccagagt
gggttgatgaactttgaatctcccgtattaaatcaacccaatactcaattacaaagcaac
actgtcaatttcaaagaatgtgaactcctaaccgcactcaaaactgagcagaacaaagcc
ccaatcccaccacataatcctccacaagtgaagatgatcagttccaactccatcctcact
tcttcatctgcatcaatagtcacacttgccccacaaaacatcgtccatcataaaactttg
ccaaatacttctggggctagaacagttactaagatcaatggtcctaaaatcatcaaaatt
ccagctttaaaagcaggctccatcataaaaatcaacaagttcggaaaagctgatattatt
caacgagttaaaggcaacgtggtgcagaatgggttaaacacattaaacaaagaatccata
aacacagatggagccaaacaagtcacgatagctagcagtttaccaaccactataatcaga
aacactgcattggactctaaaccacaattgccaaaaactatatttttacctgcaaaggac
agtgcacatagtaatgtaatatcaacgacaagagcgggtactccgccaatttctacgcta
agaaatcctcaaaaaactgcgataatatcatccatcccaccaagcactgtacgcttgtca
cggtccgctagttttaatgttccaattcaacggacgcagcaaatcatttccacccaaatt
ccagccgttcctcaaaccaataaaagtcaaagcagctgcaatttgggcagtttatttgtt
gaaacagttgaaaagtcggcaagttttaacgcaccgcactccccattttccctggttctt
cctgaaccaaacacacagactacttctcaatcattgtctcatttttttacgaccaacatc
acatctagtgacgtcagcaaatcacattccatctacgcttcaccctccttacaaagaaac
attccacctacagtagtcccaccaactatccatataccacaacctacacctgatacaggg
caaggtactgtaaggttctatgggaaaggtctagctctcagaacattgtcgatgccagcg
ttgaaacctggtgaagaattggcagctgaagaggagagagaggaagaagcagagatgcaa
cacactcacacttatgcactttatatgccaagcaaattgaacattggtcacccccatcca
gacagtgtggttgaaacgagttcattatccagcattatgccccctgatataaagtaccaa
ctatctatacctcaatacaccatagatcactgtctgttgtcggcactgcagttggagtca
gttgtttatgcttgtcagaagcatcagatgtttttacccaatggagagcgcgccggttat
tttataggggatgggccaggggtggggaaagggaggactgtggctggtgtcatctatgag
aattatttgttgggaaggaaacgagctttatggtttagcgtttcgaatgatcttaaatat
gatgcagagcgtgatttgcgggacattggtgcaaaaaatattaaagtttattcattaaac
aagtttaaatatggaaaaatcactgcgaaaaacaacggagccgcaaagaaaggcgttata
tttggaacttattcatctcttattggagaaagtcaccaacaaggaaaatatgggaccagg
ttgaagcagattcttaactgggtgggagaggatttcgatggcgtgattatttttgacgaa
tgtcataaagcaaaaaaccttgtaccatctggttctggcaaatcaactaaaaccggacac
acagttctgcagctgcaaacccatttaccaaatgccagagttgtatatgcgagtgcgact
ggtgcatcggagcccaagaacatggcttacatgtcaagacttggtttatggggaagtgga
actcctttcccacaattcacggattttattcaggctgtggagcggcgcggtgtcggagcc
atggaacttgtagccatggacatgaagctaagaggcagctacattgctcgtcagctcagc
ttttatggcgtttcctttcggattgaggaagttcctttaaacaattccttcatctcaatg
tacaacaaagctgtgaaactgtggatgttggcccgagctgccttccaagcagcagcaagc
atgatagaagcagaatatcacatgaagaaatcaatgtgggcgcaattctggtcggctcat
cagaggttctttaaatatctgtgtttatctgccaaggttgactacacagtgtcgttggtc
cgtgaagcagtgaaacacggaaaatgtgtcgtcattggtttacagtcaaccggtgaatca
cgaactcttgatcaacttgagaaatgtaacggagaacttgatgattttgtttcaactgca
aaggctgtgtttgagacattgattgaaaatcatttccctgctccagatagaaaacgggta
actgctgttttaggacgagatttttataagaaagaagaacctgctgctgttgctgctgag
aaaaaagctgtgaaacgaaaacgagtcaatggtttttcaaactcctcaaaacgacatcga
ggatcaaattcatcggatgcagcatcttccagtgagtctgatgatgatctcctttcagca
agcgatgaggatgatcttccaacatcctccagtgatgaagacattcataaaattttcggg
gagccatcggacagtgaagattgggaaaaaagtgaaagaaaacgaaacaaaaacgaacac
aaacttaaaaataaatcaaaacacaacaacaacaacggtgtaaagcatgaagatggtgat
cattcaagcacgaatcatgtgactaaatcaaccaatgagaagaaagaagatgcatcagtt
gttttaaaatcccttgattctgtctcaggtacactcatttcatcgttaccaggtatggga
ccaatagaacaagctcaagcattgaagagtgaattgcttgagaagctggaaacactggga
agttgtttgcccaacaatatgttggatgagcttattgattcacttggggggccagagaat
gttgcagagatgactggtcgtaaaggtcgagttatcgcaactgatgaaggaaatgttgaa
taccaaacaagagctgagagcgatgtgccagtggaattacttaatatgactgaaaaacag
aggttcatggatggtgagaagaacatcgcgatcatcagtgaagcagcaagctccgggatc
tccctccaagctgacaagcgagctcgtaaccaacggcgacgacttcacatcacgctcgag
ttgccatggagtgcagatcgggcaattcaacaatttggccgaacacatcgttcgaaccag
gtaaacgcccccgaatacgtgttcgttatcaccgagcttgctggcgaacacagattcgct
tcagtggtcgcaaaacgacttgaaagtttgggggctctcacccatggagacagacgagct
actgaatctcgggatttcagcaaatacaactacgataataaatatggaaggaaagcactg
gaacttgttcttaaatcaatagctggatatgaaatgccaatcgtaccaccacctaagaac
tataaaggaaacttctttaaagacatggagcaagcattacaaggtgttggtctcattatg
catgaacctggtcaagtgcattatcaactagataaagattacaacaacatctttaaattc
atgaaccgtatgttgggaatggaggttgaacatcagaacggattatttctgttcttcact
caaactttaaatgcaattgtacaagatgcaaaaagatctggacaatttgatcagggcatt
gttgatcttggagccgagaaccaaatcgttgaagtcttgaagaccaaagagttcccgata
atgtgtggtggtcgtgtctcgcttcaatccgtgcaaatagaacgtggtatatcgtgggtg
gatgcgttgcgtatattcgaagatggctcgattggaagcagcagtggtttctatgtaact
ttaactcaaagaaatggaaagcacatggtcattttgatcattgaatcaacgtctcagcgc
catcgagggccggcgactttcgttgtgtatcgtcctaacacagggaagcaagtacgcaag
gagacattggaggatttaaagaagaaatacaagcgagttgaaagcgatgaagcagaagtt
tggtggtgtaaacatcacgaggcttcattagatcaatgcagtcacagattttggcaaggc
tcttgtagcaaaggcaacagtttgtgtcacattggtaaacggcgtcgtatgtaccacgtt
ctagcaggatcagtactcgctgtgtggcgtacagtagaagaagttcttttaatggaaggg
gggtctaaatataaaatgcaagttgtaaggttgaaaactcaagaaggaaatcgtattgtt
ggtgttcttattcctaccatttgcgtcactagcctaatggctgcactcaatcgtgaagct
gagtctataccaatatcaaataacgtggtacaaaacttcccgcagcagttaaacgaattt
tcaagcgacgattcagatgattatgaggacgttgaacctgatgaaatgttgtctagcgta
cttgctcctaaaagcaatgtagtttggcaactgtga
DBGET
integrated database retrieval system
