Ciona intestinalis (yellow sea squirt): 100185670
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Entry
100185670 CDS
T01056
Name
(RefSeq) WD repeat domain phosphoinositide-interacting protein 2
KO
K17908
autophagy-related protein 18
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04136
Autophagy - other
cin04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100185670
04136 Autophagy - other
100185670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100185670
03029 Mitochondrial biogenesis [BR:
cin03029
]
100185670
Membrane trafficking [BR:
cin04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
100185670
Mitochondrial biogenesis [BR:
cin03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
100185670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WD40
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WDR55
Beta-prop_RSE1_2nd
WDR54
Beta-prop_HPS5
WD40_MABP1-WDR62_1st
EIF3I
Beta-prop_WDR19_2nd
Beta-prop_Vps41
BCAS3_WD40
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
100185670
NCBI-ProteinID:
XP_002129261
LinkDB
All DBs
Position
4:complement(5064379..5066277)
Genome browser
AA seq
420 aa
AA seq
DB search
MNYNLGSRGSEHLTRGILFANFNQDCTSLAVGTKQGYKLFAINSVDGLEVIYDNEGETTD
VCLVDRLFSSSLVAIVSVSSPRKLKVCHFKKGTEICNYSYSNTILSVKLNRIRLVVVLEE
SLYIHNIRDMKVLHTIRDTPSNPKGLCCLSVNNDNSFLVYPGSSITGEVQIFDVTTLNAV
STINAHDSPLAAMAFNSSATKLATASSKGTVIRIFSVPDGQKLFEFRRGVKRCVSIGSLA
FSPDSLFLCASSNTETVHIFKLEQAGVEKAPVTDEGASWIGYFNKVLSNSASYLPTQVSE
VLNQGRDFATVKLPFQGSRNVCAITVLQKLPRVLVADEDGFLYIYNLDPTEGGECVLLRQ
HNVAQFGQQAAQDIPETSAAYHDSDSPPHFHSTSVNEQLDMPETLHVDTNVVSINESSNH
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaattacaacttgggcagtcgtggcagcgagcatttaacccgtggaattctgtttgcc
aacttcaaccaggattgtacatcgcttgctgtgggaacaaaacaagggtacaaattgttt
gctattaattcggttgatggattggaagtaatatacgataatgaaggtgagacaactgat
gtatgcttggtggatcgcttattttcaagcagcttggttgccattgtcagtgtttcgtca
cctcgtaagctaaaagtgtgtcacttcaagaaaggaacagaaatttgtaattatagctac
tcgaacacgattctttctgtcaaattgaaccgaataaggctggtggtggtactggaggaa
agtctttacattcacaacattcgtgatatgaaggtcttgcacacgattcgagacactcca
agtaaccctaaagggctctgctgtcttagtgttaataatgataactcttttcttgtgtac
cccggcagcagcataacaggagaagtacagatatttgatgtaaccaccttaaatgcagta
agcacgataaatgcacatgacagtccattagcagcaatggcatttaattcaagtgctaca
aaacttgccacagcctcttccaaagggactgtgattcgtatattttctgtccccgatggt
caaaagctgtttgaattccggcgtggtgttaaacgctgtgtttctattggctctcttgcg
tttagccctgactcgttgtttctatgtgcttcaagcaacaccgaaaccgtccatattttt
aaactggaacaagctggagttgagaaagccccagttacagatgagggagcatcttggata
ggctacttcaacaaagtactgagtaattcagcaagttatctgccaacccaggtgtcggag
gtgctcaaccaaggccgtgactttgccactgtgaaactgccatttcagggctcaagaaac
gtctgtgcaattacagttcttcagaaactgccacgagttctagttgcagacgaagatgga
tttctctacatctataacttggatcccacagaaggtggtgaatgtgtcttacttcggcag
cataatgtagctcagtttggtcaacaggcggcgcaggatatcccagagacctctgccgca
tatcatgacagtgattctcctccccactttcattccacatcagtcaatgaacaacttgac
atgcctgaaacactccatgttgatacaaatgttgtttcaataaatgaatcttcgaatcac
taa
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