Ciona intestinalis (yellow sea squirt): 100185829
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Entry
100185829 CDS
T01056
Name
(RefSeq) pre-mRNA-processing-splicing factor 8-like
KO
K12856
pre-mRNA-processing factor 8
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100185829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100185829
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
100185829
Complex C
U5 SnRNP specific factors
100185829
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRO8NT
Motif
Other DBs
NCBI-GeneID:
100185829
NCBI-ProteinID:
XP_009862080
LinkDB
All DBs
Position
Unknown
AA seq
672 aa
AA seq
DB search
MDLGFGLPPGIHQHGVGAIHASGISQEMLQEKARKWQQLQSKRYAEKRKFGFVDPQKEDM
PPEHVRKIIKNHGDMTNRKFRHDKRVYLGALKYMPHAVLKLMENMPMPWEQIRDVQVIYH
ITGAITFVNEIPWVIEPAYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADN
ILDVEPLEPIQMELDPDEDAAVIDWFYDNKPLQDDSKFVNGPTYRKWHLTLPQLSALYRM
ANQLITDLVDDNYFYLFDLKAFFTSKALNQAIPGGPKFEPLIRDNTLMDEDWNEFNDINK
IIIRQQIRTEYKIAFPYLYNNLPKFVHLAWYHTPNVVFIKTEDPDLPAYYFDPIINPISH
RHGVKSVESGLEEDVESLELPEYVQPLLQETPLYSDNTANGIALLWAPRPFNLRSSRTRR
AVDVPLVKTWYREHCPAGQPVKVRVSYQKLLKCYVLNALKQRPPKPQKKRYLFRSFKATK
FFQSTKLDWVEVGLQVTRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRF
GNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLADGLQYVFAHVGQLTGMYRYKYKLMR
QIRMCKDLKHVIYYRFNTGPVGKGPGCGIWAPGWRVWIFFMRGITPLLERWLGNLLARQF
EGRHSKVGCYII
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggatctcggatttggtttaccgcccggcatacatcagcatggtgtgggcgccatacat
gcgagtggcattagtcaagaaatgttgcaggaaaaagcaagaaaatggcaacagctacaa
agcaaacgttatgctgagaaacgaaagtttggtttcgttgatcctcaaaaggaggacatg
ccgcccgagcatgtccggaagattatcaagaaccacggtgatatgacgaaccggaagttt
cggcacgataagcgggtttatttaggtgcattgaagtatatgccacatgccgtgttaaaa
cttatggagaatatgccgatgccttgggaacagattcgtgatgtacaggtgatatatcat
atcacgggagctatcacgttcgtgaatgagataccttgggtcatcgaaccagcgtatatt
gcacagtggggaacaatgtggattatgatgagacgagagaaacgagatcgtcgacatttt
aaaaggatgaggtttccaccgtttgatgatgaggaaccgcctcttgattacgccgacaat
atacttgacgttgaaccactggaacctattcagatggagcttgaccctgacgaggatgcg
gccgtgattgattggttttatgacaacaagcctttgcaagatgattcaaaatttgtgaat
ggaccaacatatcgtaaatggcatcttactctaccccaactatcagcgttgtacagaatg
gccaatcaacttataactgacctggttgacgacaattacttttatctgtttgatttaaaa
gctttcttcacatcgaaagctctcaaccaagcgattcctggaggccctaagttcgaacct
ttgattcgcgacaacacgttaatggacgaggattggaacgaattcaacgacattaacaaa
attataattcggcaacagatcagaacggaatataaaatagctttcccatatctttacaac
aaccttccaaagtttgttcatttggcttggtaccacacaccaaatgttgtgtttattaaa
actgaagacccggacctccctgcgtattactttgatccaatcattaacccgatatcacac
aggcatggtgttaagtcagtagagtctggtcttgaagaagatgttgaatcgcttgaactt
cctgaatacgttcaaccactcctgcaagaaactccactttattcggataatacagcaaat
ggaatcgcactgttgtgggcgccacgcccctttaatttacgatcatcgcgtacaagacgt
gcagttgacgttcctctcgttaaaacttggtaccgagaacattgccccgcagggcaaccc
gtgaaagttcgggtatcttaccagaagttgctcaaatgttacgtgttgaatgctttgaaa
cagcgaccaccgaagccacaaaagaaaagatatttgttccgatccttcaaagcaacaaag
tttttccaatcaacaaaacttgattgggtagaagttggtctgcaggtcacgcgacagggt
tacaacatgcttaacttgttaattcaccgaaagaatcttaactatctccatcttgattat
aattttaatttaaaacctgtcaaaacattgacaactaaagaacgaaaaaagtcaagattc
ggaaacgcttttcatttgtgtcgagaagttttacgattgtccaaacttgttgttgacagt
catgtgcagtacaggctcggtaatgtcgacgctttccagcttgcggatggtttacaatat
gtgttcgcgcatgtcggccaactcacaggaatgtaccgatataaatataaactcatgcgg
cagatcaggatgtgtaaggatttgaagcatgttatctactataggttcaacacgggtccg
gtgggtaaaggaccagggtgcgggatatgggccccggggtggagggtgtggatattcttt
atgaggggaatcacgcccttgttggaacgatggttgggaaacttactcgctcgtcagttt
gaaggacggcattcaaaggttgggtgttatataatatag
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