Ciona intestinalis (yellow sea squirt): 100185858
Help
Entry
100185858 CDS
T01056
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 16-like
KO
K15159
mediator of RNA polymerase II transcription subunit 16
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100185858
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
Tail
100185858
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med16_bridge
Med16_N
Med16_C
Beta-prop_IFT140_1st
Beta-prop_THOC3
ANAPC4_WD40
Beta-prop_VPS8
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_HPS5
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
WD40_WDHD1_1st
PAN_4
Motif
Other DBs
NCBI-GeneID:
100185858
NCBI-ProteinID:
XP_018668332
Ensembl:
ENSCING00000007303
LinkDB
All DBs
Position
8:complement(3806131..3814919)
Genome browser
AA seq
829 aa
AA seq
DB search
MDPVYEIDWQADVNQITLGHGDIVECAWSASNFFAFTTEKNNQGSVTQYLHILNPNQPWG
VFSTKYNDGAITCLQWDHTGTRLVSGDNHGLCCLWTMSNSLCNVWTHQNKHNIFLEGEEI
LSLGWLHNGARFLFHIDKMESSNLGEKFDRAKFWPTVMQHGGKAMEGFIVVTGSGLAAVR
LLLVDGESVESQFRLNVMCHQQIADIAFTSQGKVVVMTTDSEIQHFIQFHEIQLTYNTQD
HLISHEVSALPSLQLRCASEEHSPYTYISHAHFVSRENQDHVLICVSGPTGSKFESWLIR
KESVQLHRIFQQNTNPVSTTPDVSKCWHYVTNSTHLPQVLNFSIPTLPIDASSSENKVSQ
ESKFFCGFCFAVALADNTIQILHRLFLQVLVTQHLPVTTNSQETTPGKAMKMTQQFGVRH
VSFSTLSCAMIAADKHGRLLLYRIPPWLTTPNRTNTMQSLKQLLQLMLYCLVSGKEWWEI
LLHVHPNLVEPLVKQLSVECGNQTSAVQQVLELRLQALKISIYHITASPVATDLHLKMLF
QAISLVFRSLVRPHQQVGGEEIDPATKLQNISRTSTETNIDQLVQNVDTDPQTLQSMQQL
IQWVADVALYLLASVPLYKQANRPGYSLYWDRDWLSLLREMLVLIRVWGLLKSACSPVFN
VLDSRMDVLSHVFKLVTQLWMASTDDHRMTDLPTSLINECSALPFHIIIPPLEPTPPPNS
VLSQMRNFSGTRRFTFGETPQDSYIMLSRQHMMDHVAVAGSSGKVDSLRRIFLGKSPNQE
LKECVRCGVTTTCNNLLRSTLKVWDQRFVSSCVCGGHWKKLNSHPVPLH
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggatcctgtttatgaaatagattggcaagcagatgtcaaccaaataactcttggtcac
ggtgacatagtagagtgtgcgtggtcagcaagcaacttttttgcgttcacaactgaaaaa
aacaaccaaggttcagtcactcagtatcttcatatattaaaccccaaccagccatggggt
gtatttagcactaaatataatgatggtgcaattacttgcttgcagtgggaccatacaggt
acaagactcgtatcaggtgacaaccatggcttatgctgcctgtggacaatgtctaactcc
ttgtgtaatgtgtggactcatcagaataaacataacattttcctggaaggagaagaaata
ttatcattaggctggttgcataatggtgcaaggtttttattccatatcgacaaaatggag
tcatcgaacttgggtgaaaaatttgatcgagcaaaattttggccaactgttatgcagcat
ggtgggaaggctatggaaggttttatcgttgttactggttcggggcttgctgctgtgaga
ctacttcttgttgatggcgaaagtgtcgagtcacagtttcgtctaaatgtgatgtgtcac
caacaaattgctgatattgcatttacgagccaaggtaaagtggttgtgatgacaacagac
agtgagattcaacatttcattcaattccatgaaattcaactcacatacaacacacaggat
catcttatatcacatgaggtatctgcacttccaagtttacagctacgttgcgcaagtgaa
gagcattcaccttacacctatatatctcatgctcattttgtatcacgtgaaaaccaagat
catgtgcttatttgtgtttctgggccgactggttcaaaatttgaaagttggttgattcgt
aaagagagcgttcaactacatcgaatatttcaacaaaatacgaacccagtgtcaaccaca
cctgatgtttctaagtgctggcattatgttacgaactctacacatctgccacaggttctt
aacttctccatacccacccttcccattgatgcttcatccagtgaaaacaaagtctcacag
gaaagcaagtttttctgcggcttttgttttgcagttgcacttgcagacaatacaattcaa
attctacacaggttatttctgcaggtgttggtaactcagcacttgccagtaacaactaac
tcacaagaaacaacacctggtaaagcaatgaagatgacccagcagtttggagtcagacat
gtttcattttcaacactttcttgcgctatgatagcagcagataaacatggtcgtttactt
ttatatcgtattccaccatggctaaccacacctaacagaacaaacactatgcaatcattg
aaacaacttctacaacttatgctctactgtcttgtatctggaaaagaatggtgggaaatt
ctgcttcatgttcatcccaacttggtggaaccactggtgaagcaacttagtgtggagtgt
ggtaaccaaacatcagctgtacagcaggtgctagagttaagattacaagcattaaagatc
agcatataccacatcactgctagtcctgttgctactgatctacatcttaaaatgctgttt
caagctatttctcttgtgtttcgttctcttgttcgaccccaccagcaagtggggggtgaa
gagattgaccccgctactaagctacagaatatatccaggacatccacagagaccaacatt
gatcagttggtacagaatgttgatactgatccacagaccttacaatcaatgcaacaactt
atacaatgggtggcagatgttgctttatatttgcttgcgtctgtgccactatataaacaa
gccaaccgacctggctactctttatattgggatcgtgactggctatccttgcttcgtgag
atgcttgtacttataagggtctgggggttgctcaagtcagcgtgctcacctgtgtttaac
gtgctcgactcacggatggatgtcttgtctcacgtgtttaaactcgttactcaactttgg
atggctagcactgatgatcatcgtatgaccgatctaccaaccagtttaatcaatgaatgc
agtgccttacccttccatattataatcccaccccttgaaccaaccccaccacccaacagt
gtgcttagtcagatgagaaatttcagtggtactcgaaggtttacatttggagaaactcca
caggatagttacatcatgttgtcacgccaacatatgatggatcatgttgctgttgctggt
agctctggaaaggttgactcacttagaaggattttcttgggaaagtcaccaaatcaggaa
ttaaaagaatgtgttcggtgtggcgtcacaacaacttgcaataatctcctgcgttccacc
ctgaaagtttgggaccaacgttttgtttccagctgtgtgtgtggtggccactggaagaag
ttaaactcccatcctgttccattgcattga
DBGET
integrated database retrieval system
