Ciona intestinalis (yellow sea squirt): 100185882
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Entry
100185882 CDS
T01056
Name
(RefSeq) ribosome biogenesis protein BMS1 homolog
KO
K14569
ribosome biogenesis protein BMS1
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
100185882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cin03009
]
100185882
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
GTPase
100185882
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIBIOP_C
AARP2CN
Tsr1_G-like
GTP_EFTU
MMR_HSR1
AAA_22
DO-GTPase2
AAA_14
AAA
PduV-EutP
FeoB_N
RsgA_GTPase
ABC_tran
Motif
Other DBs
NCBI-GeneID:
100185882
NCBI-ProteinID:
XP_009860465
Ensembl:
ENSCING00000003181
LinkDB
All DBs
Position
12:2200783..2218436
Genome browser
AA seq
1135 aa
AA seq
DB search
MDTDAPAKAHRARRAGRKAEKRQKNSEDADTKQRNPKAFAIQSTNKLNRAFRRAQDVKAR
KHHIPVVDRTPQEPPPIVVAIVGPPKVGKTTLLNGILKNYTRQKVSEIKGPVTLVSGKHR
RLTLIECNNDMTSMIDIAKVADLILLMIDASFGFEMETFEFLNICQVHGFPKVMGILTHL
DSFKQQKTLKKTKKALKHRFWTELYQGAKLFYLSGMVFGEYQRTEVRNLCRFISVMKFRP
LTWRSTHSYVFADRMEDITDPETLRVEPTCNRNISIYGYVRGTHLKPSTAVHIPGAGDYR
LHNISFLHDPCPLPDRGDKKQRRSLDVHERVMYAPMSGVGGIVYDKDAVYIDVDGSNNTA
ESQQQNVPETILKSSIIDSSKTIDSKMEESKVSLFTGDEPLSTEQAESMINMKMPDEEVV
HQEDGRVRRRDVFHDNDGEGREDSGIDDSDDEDSDESDDEFYPQDEAQDAENQDEEIDME
TEQVEQEDEDSDEDKVEGSGLNWKIDLREKAAKAFIERQSSSVNLQRLVYGAVQEVEEEE
SGEEGEEKLRGGLFKVTSNEDETDKKRKRNNRECSRDLSKMIRDWIDDHEARESIADCFV
TGNWGEEEDAKTLLDQDDEIYGDFEDLETGDVVKGNDAKTTNQNEDEKEDEIFDAHESKK
DRESRMREKRMERKRKLKEAFDRNYDVDKTGGASGGGESTLFDDVKRELNEQARLNREEF
ENMDDTTRVQYEGFRPGMYVRLELRGIPAEMIQQFDPHYPLIVGGVSSTEENMGFLRTRV
KRHRWYKRILKTRDPLIVSIGWRRYQTLPMYYMEDHNLRQRMLKYTPEHMHCWALFYGPI
TPQGTGFLAVQSISGATPDFRISATGTVLESDCSTQLVKKLKLVGYPYKIYKNTCFIKGM
FNSPLEVAKFEGASIRSVSGIRGHVKKAVTNGGKEQGPPGAFRAMFEDKLLMSDVVFCRT
WYPVQVPKMYIVVSNLMINKKDSWQAMKTVGQLRFEQNLKVPVNEDSLYKPIVRPEGRQF
SSLVIPRALQKELPFKSKPKYLRGKNQTKHDKLMKKAVVREPKDRQIAALMNALRTMDKN
KKQTKKLERKKQMAEHKKLLEKQVVKDQWRHKEAKKKIYKALAKSEKKKSKVSEE
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggataccgatgcaccggcaaaagctcacagagcccgacgcgctggacgtaaagcagaa
aagcgacagaagaacagcgaagatgcggacactaaacaacgaaatccaaaagcgtttgca
attcagagcacaaacaagttaaacagagcatttagaagagcccaggatgtgaaagcccgt
aagcaccacatacccgttgtcgaccgaaccccccaagaaccccctcctattgtcgtagcg
attgttggtcctccaaaagtaggaaagacgacccttctaaatggaatccttaaaaactac
acgcgtcaaaaagtttcggaaatcaagggaccagtgacattagtgtcaggtaaacatcgt
cgacttacattgatagaatgtaacaacgacatgacctctatgattgatattgctaaagta
gctgacctgattctgctaatgatcgatgccagttttggatttgaaatggaaacatttgaa
tttcttaacatttgtcaggtgcatggctttccgaaggtcatgggaattctgactcatctt
gattcgtttaaacaacaaaaaactttgaagaaaacgaaaaaagctttaaagcatcggttt
tggacagaactttaccagggggcaaagttattttacttaagtggtatggtgtttggtgaa
tatcaacgtactgaggttcgtaacctttgtcgcttcataagcgtcatgaagttccgacct
ttgacctggaggtcaactcattcatatgtgttcgctgaccgtatggaagacataactgac
cctgaaactttgagagttgaacccacttgtaaccgcaatatatccatatatggttatgta
cgaggcacgcacctcaaaccaagcacagcagttcatataccaggtgctggtgattacaga
ttacataatatttcatttctacacgatccatgtccactgcctgacagaggagataaaaaa
caaagaaggagtttggatgtacatgagcgtgtgatgtatgctcccatgtcaggggttgga
gggattgtctacgacaaggatgctgtttatattgatgtggatggtagtaacaacacagct
gagtctcagcaacaaaatgtccctgaaacaattctgaagtcatcaatcatagattcatcg
aaaacaatcgattctaaaatggaggaaagcaaagtttctttgtttactggagatgaacca
ttgtctactgaacaagcagaaagcatgataaatatgaagatgcctgatgaagaagttgtg
catcaggaggatgggagagtgaggagaagagatgtcttccatgataatgatggggaggga
agagaggacagtgggatcgacgactcagatgatgaagattcagatgaaagtgatgacgag
ttttatcctcaagatgaagctcaagacgcagaaaaccaagatgaagaaattgatatggaa
actgaacaagttgaacaggaagatgaggattcagatgaagataaagttgaaggatctggg
ttaaattggaaaattgatttgagagaaaaagctgcgaaagctttcattgaaaggcaaagt
tcttccgtgaatctccaacgccttgtgtatggagcagtgcaagaggtggaggaggaggag
agtggggaggagggagaggagaagttgagaggggggttgttcaaggtcacttcaaatgaa
gatgaaacagataaaaagcgaaaacgaaacaatcgtgaatgctcccgtgatctaagcaag
atgattcgtgattggatagatgatcatgaagctcgtgaatcaatcgccgactgtttcgtc
acaggaaattggggagaagaggaagatgccaagactttacttgatcaggatgatgaaata
tacggagattttgaagatttggaaactggggatgttgtcaagggcaacgatgcaaaaacg
accaatcagaatgaagacgaaaaagaagatgaaatttttgacgcacatgagtcgaagaaa
gatcgtgaatccaggatgcgagagaagaggatggagcggaaacggaagctcaaagaggcg
tttgatcgaaattatgacgtagataagacaggaggtgcttctggtgggggtgagagcact
ttgttcgacgacgtcaagcgcgagttgaatgaacaagctcgactaaatagagaggaattt
gaaaacatggatgacacgactagggttcaatatgaagggtttagacctggtatgtacgtt
cgtcttgaactgaggggaattcccgctgagatgatccaacagtttgacccccattacccc
ctgatagtgggtggggtgtcgtcaactgaggaaaacatggggtttctacgtacaagggtg
aaaagacacagatggtacaagaggatacttaaaaccagagatcctctcatagtttcaatt
ggttggcgtcgttaccagacactccctatgtattatatggaagatcacaacttaaggcaa
cgtatgttaaaatacacacctgaacatatgcattgttgggctttgttctatggacctatt
acaccacagggcacaggttttcttgctgtgcagtccatcagtggtgcgactcctgatttc
cgtatatctgctactgggactgtactggagtcggactgtagcactcagcttgttaagaaa
cttaaactggttggttatccgtacaaaatctacaagaacacttgttttattaagggaatg
ttcaacagcccactggaagtagcaaagtttgaaggtgcttctattcgttcagtgagtggt
atacgtgggcatgtgaagaaagctgtcactaatggtggtaaagagcaaggacctcccggt
gcgttccgtgcaatgttcgaggacaaacttctaatgagcgatgtcgtattctgtaggacc
tggtatccagtccaagttcccaagatgtacattgttgtttctaacttaatgataaacaag
aaagattcgtggcaagcaatgaaaactgttggccaacttcgttttgaacaaaatcttaaa
gtaccagttaatgaagactccttgtacaagccaattgttcgacctgaaggccgacagttc
tctagtttggtgattccccgcgcactgcagaaagaacttccatttaaatcgaaaccgaaa
tatttacgagggaaaaatcaaacaaaacatgataaactaatgaagaaggcagttgttaga
gaaccaaaagatagacagattgctgcattaatgaatgctttacgcaccatggataaaaac
aagaaacaaactaagaaattggagcgaaaaaagcaaatggctgagcacaagaaattatta
gaaaagcaagtggttaaagatcaatggagacacaaggaagcaaagaagaaaatttataaa
gctcttgctaaatctgagaagaaaaaatcaaaagtttctgaagaatga
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integrated database retrieval system
