Ciona intestinalis (yellow sea squirt): 100185906
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Entry
100185906 CDS
T01056
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03013
Nucleocytoplasmic transport
cin03015
mRNA surveillance pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100185906
09122 Translation
03013 Nucleocytoplasmic transport
100185906
03015 mRNA surveillance pathway
100185906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100185906
03041 Spliceosome [BR:
cin03041
]
100185906
03009 Ribosome biogenesis [BR:
cin03009
]
100185906
03012 Translation factors [BR:
cin03012
]
100185906
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
100185906
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
100185906
mRNA cycle factors
Stress granule specific factors
100185906
Spliceosome [BR:
cin03041
]
Complex C
Other components
EJC/TREX
100185906
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
90S particles
Helicases
100185906
Translation factors [BR:
cin03012
]
Eukaryotic type
Initiation factors
eIF-4
100185906
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
UvrD-helicase
AAA_22
ERCC3_RAD25_C
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
100185906
NCBI-ProteinID:
XP_002126471
Ensembl:
ENSCING00000007818
LinkDB
All DBs
Position
10:4699417..4703770
Genome browser
AA seq
409 aa
AA seq
DB search
MATFERSGGSAVRNVKKDNDMSKVTFETSEEVDVTATFDSMGLREDLLRGIYAYGFEKPS
AIQQRAIKQITKGRDVIAQAQSGTGKTATFSISVLQMIDTQLRDTQALVLSPTRELAQQI
QKVILALGDYMSVQCHACIGGTNVGEDIRKLDYGQHVVSGTPGRVFDMIRRRSLRTRSIK
MLILDESDEMLNKGFKEQIYDVYRYLPPAIQVVLLSATLPHEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVDKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRDANF
TVLCMHGDMPQKERTEIMKQFRSGESRVLICTDVWARGLDVPQVSLIINYDLPNNRELYI
HRIGRSGRYGRKGVSINFVKNDDIRILRDIEQYYSTQIDEMPMNVSDLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggcaacatttgagcgaagtggtggttctgccgttcgcaacgtaaagaaagataatgat
atgtcaaaagttacgtttgaaacttcagaagaggttgatgtcaccgcaacttttgattct
atgggactgagggaagatttactaagaggaatatatgcttatggatttgaaaaaccatca
gcaattcaacaaagagcaatcaagcaaatcacaaaaggcagggatgtcattgcacaggct
caatccggtactggtaaaactgccacattctccatctccgtccttcagatgatcgacacc
caacttcgtgatactcaagctctggtgctttccccaacaagagaattggcccaacagatt
caaaaggttattcttgcccttggtgattacatgtcagtacaatgtcatgcttgtattgga
ggtacaaacgtaggagaggacattcgtaaattggattatggtcaacatgttgtgtctgga
acaccagggcgtgtattcgacatgatccgcagaagaagtctccgtactcgttccatcaag
atgttaattctcgatgaatccgatgaaatgttgaacaaaggattcaaagaacaaatttac
gacgtttaccgatatttgccgccagcaatacaggttgtattattgagtgctacacttccg
cacgaaatccttgagatgacaaacaagttcatgactgacccgatcagaattctcgtcaaa
cgtgatgaactgacactagagggcatcaagcagttcttcgtagctgtagacaaggaggaa
tggaagttcgacactttatgtgatctttatgatactcttaccatcacacaagctgtcata
ttctgcaacacaaagcgtaaggttgactggctgactgaaaaaatgcgagatgccaacttc
actgtattgtgtatgcatggtgatatgccacagaaggagaggactgaaattatgaaacaa
ttcagatcaggagaaagtcgtgtattgatctgcactgatgtttgggctcgtggattggat
gttccacaagtatctctcattatcaactatgatctaccgaacaacagagaactttacatt
cataggattggaagatctggacgttatggcagaaagggtgtgtctatcaactttgttaag
aacgatgatattcgtatcttgcgtgatattgagcaatattactccacacaaattgatgaa
atgcccatgaatgtttctgacttgatctga
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integrated database retrieval system
