KEGG   Ciona intestinalis (yellow sea squirt): 100186009
Entry
100186009         CDS       T01056                                 
Name
(RefSeq) retinoblastoma-binding protein 5-like
  KO
K14961  COMPASS component SWD1
Organism
cin  Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:cin00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cin03036]
    100186009
Chromosome and associated proteins [BR:cin03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     100186009
    COMPASS/SET1 complex (yeast)
     100186009
    MLL-HCF complex
     100186009
    MLL3/MLL4 complex
     100186009
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40 WD40_CDC20-Fz EIF3I ANAPC4_WD40 Beta-prop_IFT140_1st WDR55 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_2nd Beta-prop_LRRK2 WDR54 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_WDR11_1st Beta-prop_RIG_1st Beta-prop_IFT122_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Cytochrom_D1 Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_WDR11_2nd BUD22
Other DBs
NCBI-GeneID: 100186009
NCBI-ProteinID: XP_002129816
Ensembl: ENSCING00000014428
LinkDB
Position
Unknown
AA seq 503 aa
MNLELLESFGQNYPEEADGTLDTGSMAVTCTFNRHGTLLAVGCNDGRIVVWDFLTRGIAK
VYNAHAHPVCSLSWSRNGRRLISAATDNLVCIWDVLSGECLHTYRFPTPIMKVQFAPRGG
TVALVCPLRPAPVLLRVDSEHVTLPTLDELDSNIVATFDRRGDYIFTGNAKGRVAVIKTK
SLKVVASFRVTTGTTNVAIKQIEFARKGTCFLVNTADRIIRVYDGKEVFMCGKNGEPEPI
QKLQDLVNRTPWKKCCFSGDGEFICAGSAKQHQLYVWEKSVGNLVKILQGVRGEQLLDVV
WHPIRPILCSISSGVVSVWAQNQVENWSAFAPDFSELDENVEYEEKETEFDEEDEDRSED
EEVKMTEEDQVEVDVTTVDPIRAFCSSDEDEQDPECLEFLPISPEIDEPEENVLLPPPDP
TNQPTTSNEPSTKKQKVQNIKLNGTPGGEEHPLITGTKKPKKKNAGGRSRAGKPPKEAKQ
RTKVRQSRAGDDVLSMGTTIAGL
NT seq 1512 nt   +upstreamnt  +downstreamnt
atgaatctcgaactactagaatcgtttgggcaaaactatccagaagaagcggatggcacg
cttgacaccgggtcgatggccgtcacgtgcacttttaatcgacacggcacgttacttgct
gtcggttgcaatgacgggagaatcgtggtttgggatttcctgacgagaggaatcgctaaa
gtttacaacgcgcacgcacatcctgtgtgttcgttaagttggtcaagaaatgggcgtcga
ttaatctcggcagcaacggacaaccttgtgtgtatatgggacgtgttatcgggggaatgt
ctgcatacgtatcgcttcccgacccctataatgaaggtgcagttcgcaccacgggggggc
acggtggcgctcgtgtgtccgcttcgtcccgcacctgtgttgctgagggttgacagtgag
catgtgaccctgccaacactggacgagttggacagcaacattgtggccaccttcgatagg
cggggggattatatatttactggcaatgctaaaggtcgagttgccgtgatcaaaacaaag
tctttaaaagttgttgcgtcgtttcgtgtgacaactgggaccactaatgtcgcaatcaaa
caaatcgagtttgcaagaaaaggaacatgtttcttagtcaacacagccgaccgaatcatc
cgtgtatacgacggtaaggaggtgtttatgtgtggcaagaacggtgaacctgagcccatt
caaaagttgcaggacttagtgaacaggactccttggaagaaatgttgtttctctggtgat
ggtgagttcatatgtgcaggctcggctaaacaacaccaactctatgtctgggagaaaagt
gttggaaacttggtgaagatattgcagggggtgaggggagagcaactgctggatgttgtg
tggcaccctatccgtccaatactttgttcaatatccagtggcgtggtttcggtgtgggca
caaaaccaagtggaaaactggagtgcgttcgccccggacttcagcgagctcgatgagaac
gttgaatacgaggagaaagagacggagtttgacgaggaagatgaagatcggagcgaggat
gaggaggttaagatgactgaggaagatcaagtcgaggttgatgttactacggtcgatccc
atacgagctttctgcagcagtgacgaggacgaacaagacccggaatgcctcgagtttctc
ccaatttcccccgagatcgacgaaccggaagaaaacgtcctcctgccccctcccgatccg
accaaccagcccaccacttccaatgaaccatcaacaaagaaacaaaaggtccaaaacatc
aagctcaatggcacccctggtggcgaggagcatccattgataacggggaccaagaaaccg
aagaagaagaatgcgggtggtaggagtagggcggggaagccacctaaagaagcaaaacaa
cgtacaaaggttcggcaaagtagggcaggagacgatgtgttgagtatgggaactacgatt
gctggtttatga

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