Ciona intestinalis (yellow sea squirt): 100186134
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Entry
100186134 CDS
T01056
Name
(RefSeq) squamous cell carcinoma antigen recognized by T-cells 3
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100186134
03036 Chromosome and associated proteins [BR:
cin03036
]
100186134
Spliceosome [BR:
cin03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
100186134
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
100186134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
LSM_int_assoc
RRM_occluded
NRDE-2
HAT_Syf1_CNRKL1_C
RRM_3
Dsh_C
RBD_DGKtheta
Motif
Other DBs
NCBI-GeneID:
100186134
NCBI-ProteinID:
XP_002121273
Ensembl:
ENSCING00000009762
LinkDB
All DBs
Position
Unknown
AA seq
930 aa
AA seq
DB search
MSNTDTMEAHASTAVVEQEKNKNDDVVMKDDPDSDEEEEVNLAEIKLLNEKISNSPYNYQ
AHVDRIALLRKCGEFENLSSARHKMKDLFPLTKQLWLEWLEDEQKFAESEDDHQKLESLF
ELAVQDYLSCEIWLEYIQYSIRYIGTSDGVKKLRNLAERALSSVGLHVLKGSSVWEAYRE
IESAVLATIQPQPGSITTPEQNDQIIQQTAKVGLLFTRQLAVPLLNMESTMVEYEEWWKD
NGDGEIPESVLHSYDKALEQMEELKIMELALESAESPKTEEYNAYIDHEMKSNNPARIQC
IYERAITDNCLNAQLWMDYLKYLTNTLKSGPIVLSAYKRSVRNCPWVAKLWVGLVLTLER
NSEPQNKVEEGLNEALAVGFSSASEYLELWRCWCDYIRRTHEENPQEGMTVVRTEFKRAT
SHLLNEVLPGFSENADHDYTMWIYWANIEARGSQGIDEARKIMEEVMKHPDARLNWKIWE
QYYHLERLHGDLTHARNVLRHAVQSSAADDGSAESACEFLIRFERENGSLSDLDESIKKV
EGRMSKVIKRREKLVAFAEERQKKQGGKKFDKNKKPRHSPNKKENRQATKRNISNTEPQE
NIKRKRTHSPNKEGFKEPAGLPPRFVKAKSPEKTIAPPPGYKPDKQQGQENEAPTPMSED
QPAQATITSDERTAEGDKHTVFISNMSYSVQSPEEKLKIMFGCCGDVKSVRVVRDHKGKM
RGFGFVTFHQIEDVEKALNLDRQPLEGRPLYVSRNTEKSNRQKVFKYETKIEKHKLFVSG
LNFATTEETLQKVFSEHGVVKSARIVVTKGGKSKGIAFIEYENESDAAQAVMKMDETEMD
GFTIKVAISNPPPRGRSSTMGKSLGQVERGTTVGSRGKGKSQVTLIPRSLQSSKVTKPDT
IGKQEKDANDNTIHSKGLSNRDFAGLYSNP
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacactgatacaatggaagctcacgcatcgactgccgttgtcgagcaagagaaa
aataaaaacgatgacgttgtgatgaaagatgacccggattccgacgaagaggaagaagtc
aatcttgctgaaattaaattacttaatgaaaaaataagcaactctccatacaactaccaa
gcgcatgtggatcgaatagctttgttaagaaaatgtggtgagtttgaaaatctatcgtct
gctcgacataagatgaaggatttgttcccacttacaaagcaattatggcttgaatggctg
gaagatgaacaaaaatttgccgagtcagaagatgaccatcaaaaacttgagtcattgttt
gaactagctgttcaagattatctgtcttgtgaaatatggttggaatatattcaatattcc
attcgttatattggcacttcagatggagtaaaaaagctacgaaatttagcggaacgagct
ttatcttcggttggtcttcatgtattaaaaggttcatctgtttgggaggcatacagggag
atagaaagtgccgttcttgctacaatacagccacaaccaggcagtatcactacaccagaa
caaaatgatcagattattcaacaaacagcaaaagttggacttcttttcaccaggcaactg
gcagtaccattgcttaacatggaatccaccatggttgaatatgaagaatggtggaaagat
aacggagatggggaaatccctgaatcggtactacattcttacgataaagctctcgaacaa
atggaagaattgaaaataatggaacttgctttggaatctgctgaatctcccaaaactgaa
gaatacaacgcatatattgaccatgagatgaaatcaaacaaccctgcgcgtatacaatgt
atttacgaacgtgcgatcaccgataattgcctcaatgctcaactatggatggactacctt
aaatacttgacaaacacattaaagagtggacccatcgtgctatctgcttacaaacgatca
gtaaggaactgcccatgggtagccaagctatgggttgggttggttcttactttagagagg
aatagtgaacctcaaaataaggttgaagaagggcttaacgaagcattggctgttggtttc
tcatcagcgtcagaatacttggagttgtggaggtgttggtgtgattacattcgaagaact
catgaagaaaaccctcaagaaggaatgacagttgtacgaactgagtttaaacgagctacg
tcacatttgttgaacgaggttttaccaggtttcagtgaaaatgcggaccacgattacacg
atgtggatttactgggcgaatattgaagcacgaggatcacaaggtatcgatgaagctcgg
aagataatggaggaagtgatgaaacatccggatgcaaggttgaactggaagatttgggag
caatattaccatcttgagagattacacggcgatttaactcacgctcgaaatgtgctgcgt
catgctgtgcagtcaagcgcggctgatgatggaagtgctgagtcagcatgtgagttcctc
atccgattcgagcgagaaaacggaagtttatcggatctcgatgaatcaataaagaaagtt
gaaggaaggatgagtaaagtcatcaaaaggagggaaaaacttgtcgcgtttgctgaggaa
agacagaaaaaacaaggtggtaagaaatttgataaaaataaaaagcctcgccatagtcca
aacaagaaagaaaacagacaagcaactaaaaggaatatttctaacactgaaccacaagaa
aacataaaaagaaaacgaacacattcacccaataaagaaggatttaaagaaccagcaggc
ctcccaccacgatttgtgaaagcaaaatctccagagaaaacaatagcgccaccacctgga
tataaacccgacaaacaacaaggacaagaaaatgaagccccaacgcctatgtctgaggac
caacctgcccaagccacgataacgagcgatgaacgaacagcggagggcgataaacacacc
gtgtttatcagtaatatgagctatagtgtccagtctcctgaggaaaagcttaaaattatg
ttcggatgttgtggtgatgtgaagtcagttagagtagtgagagatcataaagggaagatg
agaggattcgggttcgttactttccatcaaatcgaggacgtggaaaaagcgctcaatctc
gatcgacaaccattagagggcaggccattatacgtttcaagaaacactgaaaaatcaaat
cgtcaaaaggtgttcaaatatgagacaaaaatagagaaacacaagttgttcgtatccggg
cttaactttgctaccactgaagaaacgttgcagaaggttttctccgaacacggtgtcgtg
aagtcggctcgtatagtagttaccaaggggggcaaatcaaaggggattgcgtttattgaa
tacgagaatgagtctgatgcagcacaagctgttatgaaaatggacgaaactgagatggat
ggtttcactattaaggttgctattagcaaccctccaccacgaggacgtagttcaactatg
ggaaaatcacttggtcaagttgagcgcggtactactgttggaagtcgtggaaagggcaag
agccaggtgactctaatcccaaggtcactacagagttcaaaagtcaccaaaccagacaca
attggaaaacaagaaaaagacgcaaacgacaatactatccattccaaagggttaagcaat
agggattttgctggcctttattcaaacccttaa
DBGET
integrated database retrieval system
