Ciona intestinalis (yellow sea squirt): 100186247
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Entry
100186247 CDS
T01056
Name
(RefSeq) syndetin
KO
K23288
syndetin
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cin04131
]
100186247
Membrane trafficking [BR:
cin04131
]
Protein recycling
Others
EARP complex
100186247
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndetin_C
Vps54_N
Motif
Other DBs
NCBI-GeneID:
100186247
NCBI-ProteinID:
XP_009859546
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All DBs
Position
9:598815..610468
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AA seq
931 aa
AA seq
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MKKLKELIDQVGKPTVLKQDRIDTSAIQVPHYVYKEVNRIRNPQVDRDTIASINEAFFVT
TTDPDQLELEAMPDNSTLEFIEARRESLQRQQNAVSKKLSDVILHNQPSYIKELKEVQEL
QRSLHNAFVICSNGRRALMSVGVRCSTASLSLLSNQQKRESLLTLWEALQTIKTLQHSDV
RLSELMEDEDYAGAIQLCLECQHAAATYKHYHCIKDLSTKLQDTLELIEEQIDVALSKTC
RLFDPTVYTKLQQGYQLLGKTQSAVDQLLMHYTASIHNTAFQIVFGFAELSKCESNLQKK
QYKDICSLINKDFYIPCLLELCKGVWSIMLCYHNASKWHHKNQGQLTDDDIKSYVNGKLA
HGRHRVWSDAQSRIKTFILSSELNGFKYDDFIMILDIVKRFIEVGEDFITDPSSNEQPID
SLTEPLRQQTLSYFHSHHRTRLDELLMFLENEAWQPCPVRSSFTVFGMDEFKFLKQTYQL
TPKDDPNTEVTTLDPGSRYFDPFNSEGHPFSDLQKSSQDPDSNKPKPRYDSYENSDDEDD
IDHELSLDYVDEKTGESPMSGSSSTQSLKSPSHPHGPVLTNTALHVLRLCGSYLKMCDVL
QPIALDVVICMSQLFDLYFYAVYAFFSTDEEKHRCRLDRLQSTVTHIETTLFTPEVNGKA
PNAQQEMPQISVPTLSPAVDLNQPSSYYGITERIVATESLICLASQFELLHKNLEEMIPS
SKKAFLQQFYSQTVRATTDVRYPSYLGIAIHSVDVATTVNRMSMVNWDVREIMSQHNNYV
DLLLNDLSNFRITLFGLVRSVRLPDEVVKVIWQHCITICNQAFVEGFSNVKKCSNEGRAL
MQLDYQQFLMKLEKLTNIRPIPNREYVESYIKAYYLTETDLHQWMNNHTEYNHKQLTALL
SCSAATYTSSSSNRKTKQRMMSLIDDLTNRK
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagttaaaggaactaattgatcaagttggaaaaccaacggttttgaaacaagac
agaatagacacgagtgcaatccaagtcccacattatgtctacaaagaagttaacaggatc
cgaaacccccaagtcgatagagatacaatcgccagcataaatgaggctttctttgtaaca
actacagacccggatcaactagaacttgaggcaatgccggataactcaactttggagttc
atagaagctagaagggaaagtcttcaacgtcaacagaatgctgtttccaaaaagttatca
gatgttattttacacaaccagccatcttatataaaggaattgaaagaagtgcaggagtta
caacggagcctgcataatgcatttgttatatgtagtaatggtagaagagccttaatgtct
gttggtgtgaggtgtagcactgcgagtttgtctttactttcaaatcaacaaaaacgtgaa
tcccttttaaccttatgggaagctctgcaaactataaaaacacttcaacattcagatgtc
aggttatcagagctaatggaggatgaggattatgctggtgcaattcaactctgtttggaa
tgtcaacatgctgcagccacttacaagcattatcattgtattaaagatctcagtacaaag
ttacaggacacactggagttaatagaggaacagatagatgtagcattatcaaagacttgt
cgtttatttgatccaactgtttacaccaagttgcagcaaggatatcaacttcttggaaaa
actcagtcagcagtggaccagttactgatgcattacacggcctctattcataacactgcg
ttccaaattgtattcggatttgctgagctatcgaaatgtgaaagcaacctacaaaagaaa
caatacaaagacatctgttcacttatcaacaaagacttttacattccgtgcttacttgag
ctgtgtaaaggtgtttggtcaatcatgttgtgttaccataatgcttctaagtggcatcat
aagaaccaaggtcaacttactgatgacgatattaaaagttacgtgaacggcaagttagct
catggtcgccaccgtgtgtggagtgatgcccaatcgagaatcaaaacttttattttatct
tcggaactaaacgggttcaaatacgatgactttattatgattctggatattgtgaaaagg
tttatagaagttggtgaagactttataaccgacccctccagcaatgagcaaccgatagat
agtttaactgaacccctgaggcagcaaaccctttcatatttccactctcaccatcgtaca
aggttggatgaactcctaatgttcctcgagaatgaggcgtggcaaccgtgcccggttaga
tcttcatttactgtgtttggaatggatgaattcaagtttttaaaacaaacttaccaattg
accccaaaagatgatcccaatactgaggtcacgacccttgacccagggtcaagatacttt
gacccctttaacagcgagggtcatcctttttcggaccttcaaaagtcttctcaagatcct
gattctaacaagccaaagccacgatatgattcatatgaaaacagtgatgatgaagatgat
attgatcatgaattatcactagattatgttgatgaaaagacaggagaatctccaatgtcg
ggatcatcatccactcagtcattaaagagtccaagccaccctcatggtcctgtgcttacc
aatacagctctgcatgtgcttaggttatgcgggagttaccttaaaatgtgtgatgtgttg
caaccaattgcattagatgtcgtgatttgtatgtctcagttgtttgatctttacttctat
gctgtgtatgcattcttctcaactgatgaggaaaagcatcgatgtcgacttgatcgtctt
caatcgaccgtaacccacatagaaacaacattatttactcctgaggttaacggaaaagca
cccaacgctcagcaggagatgcctcaaatatccgtccctaccctttcccctgctgttgat
ttaaaccaacccagctcgtattatggaatcactgaacgcattgttgcaactgaatcacta
atttgtcttgccagccagtttgaattgcttcataaaaacttagaagaaatgattccttct
tctaagaaagcttttctgcaacaattctattcacagacggtccgtgcaacaactgatgtc
cgctacccttcctaccttggcatcgcaatccactcggttgacgtggcaaccactgttaat
aggatgtctatggtgaattgggacgtgcgtgaaataatgtcgcaacataacaactacgtg
gatttactcttaaatgatctttctaattttagaatcactttgtttggcttagtgagaagt
gttcgtcttcctgatgaagtagtgaaagttatctggcaacactgtataacaatatgcaac
caagcttttgtagaaggattttcgaatgtaaagaaatgcagcaacgagggcagagcgctg
atgcaacttgattatcaacaattccttatgaaactagaaaaactcacaaatatcaggcca
atccccaaccgtgaatatgtagagtcttacattaaggcttattacctcactgagaccgac
ctgcaccaatggatgaataatcataccgagtacaaccataaacaactgacagctttgctc
tcttgttcggctgcaacatacacctcgtcaagttcaaacaggaaaacaaaacaacgcatg
atgtcattaattgatgatctcaccaataggaagtga
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