Ciona intestinalis (yellow sea squirt): 100186266
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Entry
100186266 CDS
T01056
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100186266
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cin03041
]
100186266
Spliceosome [BR:
cin03041
]
Complex A
U1 snRNP components
U1 related factors
100186266
Complex B
100186266
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
Motif
Other DBs
NCBI-GeneID:
100186266
NCBI-ProteinID:
XP_009859951
LinkDB
All DBs
Position
10:complement(1879399..1893379)
Genome browser
AA seq
938 aa
AA seq
DB search
MSGPRQSNGFGMGPGSDGPMRFPPRGMRPSFGPGGPGGPSGPGGPGHGPHGLPPWRHGPP
RMPMMGGPGPMGPGGQGMGMPSGPPGMMGGMGPPNGMGPPGMNMMGPPGGMMPQNNGDEQ
TLLVGADGKMTDWTEHTAPDGRKYFYNVQTKQSKWEKPEELKTEAEVMLSKCAWKEFTAD
SGKSYYYNSETKSSVWTIPKELQDLKEKIAKFEEEQKSFKAEVKGNLDPNSQNTNVDGML
DGDGNPINVDKSLPPGIIPPGVPPSMNPNNMAPGGSAQPGSGFPGPMMGNMQGGPMGPMG
MPNSGMPMMDPMQMMMQQQLIMQRQMQMLAQQNKQAKKAKKKKQKQEKKQQSSSEEEEDE
DESGKEKQEEDGKKDEMEESKQEKVTVKEDKQEWGTKEEAKAAFKDALREKKVPAASSWE
QAMKVIVSDPRYSALKKLSEKKQAFNEYKTQRGKEEKEEERIRTKENKEKYQKFLETHPK
MSSSVSYRAADKMFADNSAWKSVLERDRKEIFEDVVFYLAKKEKEEAKELRRRNMKQLRH
ILLSLKKLTYRTTWSECQQMLMDNNLFAEDEDLQNMDKEDALICFEEVIKDYEKEDKEKQ
DRKKTLEKRVFRKHRQKFVEMLDSLHEDGKLHSMSTWMELYPTISSCPTFNKMLGQPGST
PLDLFKFYVIDLKARFHDEKKIIRDILKDQGFEVGMKTTFESFAVVVTGDKRAATLDAGN
IKLAFNSFIEKAEAREKERLKEEIRKQKRIEATFRNMLKHAAPPLDVTTEWEQCRSRFVN
EEAFKAVTVEADRVRLFNEHKELIVIEAEKAAKEKAEKELRDKKKKKKKKHSSKRNRSDS
ESDDDFESQKSSKKKRARSVSSDSSSDAERKSRKHKKKSKKRHNKSPAPDQEKKSKKSSQ
EKKKKKKEKESYPSHTEDSDDDLEQQRKELIKKLESEK
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaccaagacagtcaaatgggtttggaatgggacctggatcggatggaccgatg
aggtttcctccacgtggtatgagaccatcttttgggcctggtggtccaggtggcccgagt
ggaccaggcggacctgggcatggacctcatggtttgccgccgtggagacatggaccaccg
agaatgccaatgatgggaggacccggacctatgggacctggcggacaagggatgggaatg
ccatctggacccccaggtatgatgggtggtatgggacctcctaatggcatgggaccaccg
ggaatgaatatgatggggcccccaggtggaatgatgccacaaaataatggagatgaacaa
accttattggttggcgcagatggaaaaatgactgactggaccgagcacacggcacccgat
ggtaggaaatatttttacaacgtacagaccaagcaatccaagtgggaaaaaccagaagaa
ttaaaaacagaggctgaggtcatgctatccaagtgtgcatggaaggaattcactgcagat
tcagggaagtcttattactataactctgaaactaaatcaagtgtatggacaatacctaaa
gaactgcaagatttaaaagaaaaaattgctaagtttgaagaagaacagaaaagttttaaa
gcagaagttaaaggaaacctggacccaaactcacaaaacactaatgtggatggaatgctt
gatggagatggaaatcctataaatgttgacaaatcgcttccgcctgggataattccacct
ggagttccaccaagcatgaacccaaacaacatggctcctggaggttcagctcaaccaggt
tctggctttcctggccccatgatgggaaatatgcaaggaggacctatggggccaatggga
atgcccaacagtggaatgcctatgatggaccccatgcaaatgatgatgcaacaacagcta
attatgcagaggcaaatgcagatgcttgctcaacaaaacaaacaagcgaagaaggcaaag
aaaaagaagcaaaaacaagagaagaaacaacaatccagttctgaggaggaggaagatgaa
gatgagagtgggaaggagaagcaagaagaagatgggaagaaggatgagatggaggagagc
aaacaggagaaagtgacggtgaaagaagataaacaggagtggggaacgaaggaagaagca
aaagctgcgtttaaagatgcgctccgtgagaagaaggttcctgctgcatcctcatgggaa
caagccatgaaagttatcgtatctgaccctcgttactctgcactgaagaagttaagtgaa
aagaagcaagcatttaacgaatataaaacacaacgtggtaaagaagaaaaagaagaagaa
agaataagaacaaaagaaaataaagaaaaatatcagaaattcttggaaactcatccaaaa
atgtcaagttcagtcagttaccgagccgctgacaaaatgtttgccgataattccgcttgg
aaatctgttcttgaacgagacagaaaagaaatatttgaggatgttgttttttatcttgcc
aagaaagaaaaggaagaagcaaaagaacttcgtcgacgaaatatgaaacaacttcgtcat
attttgttatcattgaaaaagttaacatatcggactacttggtcagaatgtcaacaaatg
ctgatggataataatctgtttgcagaagatgaagatttacaaaatatggacaaggaggac
gctcttatttgctttgaagaagtcatcaaggattatgagaaagaagacaaggagaaacag
gatcggaaaaaaactttagaaaagcgagtatttcgaaaacacagacaaaagtttgttgag
atgcttgatagtttacatgaagatggaaaacttcactcaatgtcaacctggatggaactt
tacccaactataagtagttgtccaacgtttaacaagatgttgggacaaccaggttcgaca
ccgctcgatttgtttaagttttacgtgattgacctaaaagcgaggtttcatgatgaaaag
aaaataattcgagatattttgaaggaccaaggatttgaagttggaatgaaaacaacattt
gaatcatttgcagttgttgttactggtgataaaagagctgcaacacttgatgctgggaat
attaaacttgcatttaacagtttcatagagaaagctgaagcccgagaaaaggaaagactt
aaagaggaaatccgtaaacagaagagaatcgaggcaacgtttcgtaacatgctgaaacat
gcagctccaccactggatgtcactacagagtgggaacagtgtcgaagtcgttttgtaaat
gaagaagcatttaaagcggtcactgtagaagcggatcgtgttcgactttttaatgaacat
aaagaacttattgtgattgaagcagagaaagcagcaaaagaaaaggccgaaaaagaatta
cgagataaaaagaaaaaaaagaaaaagaagcattcgagtaaacgaaaccgatcggattcc
gaatctgatgatgactttgaatctcagaagagttcaaaaaagaaaagagcgagatctgtt
tcatcggactcgagttcagatgcagaaagaaaatcacgtaaacacaaaaagaaatcgaag
aaacgccacaacaaatctccggcacctgatcaagaaaagaaatcaaaaaaatccagtcag
gaaaaaaagaaaaaaaagaaggaaaaggaaagttacccctcccatactgaagatagtgat
gatgatttagaacaacaaagaaaagaactcattaaaaagttagaaagtgaaaagtga
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