Ciona intestinalis (yellow sea squirt): 100186273
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Entry
100186273 CDS
T01056
Name
(RefSeq) poly(A) polymerase beta isoform X3
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100186273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100186273
Enzymes [BR:
cin01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
100186273
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
100186273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
100186273
NCBI-ProteinID:
XP_018669528
LinkDB
All DBs
Position
11:complement(2586885..2611991)
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AA seq
834 aa
AA seq
DB search
MDSGGKTYGITSPISLAEPTEKDRVLTEKLIEHIEPYGVFESESEHSARRIVLGKLNEIV
KEFVMNVSEERKLPQSLIDTAGGKLYTFGSYRLGVCAKGADIDTLCVVPRHVNRSDFFSV
FCTLLKERSEVSELRAIEDAFVPVIKLKFEGVEIDILFSRLALQVVPPDQDLRDDSLLKN
LDIRCIRSLNGCRVTDEILHLVPNIENFRLTLRVIKLWAKRKGIYSNMLGYLGGVSWAML
VARTCQLYPNAIASTLVQRFFWVFSQWEWPRPVLLKQPEESNTLNLPVWDPRYNPSDRLH
LMPIITPAYPQQNSTYNVTRSSLTVMKGEFIDGYRVTAEIHENKSSWLKLLETPNFFNEY
KHFIVLMASAESQENFNLWTGLVESKIRILVGYLERNDYILIAHINQTGYPQEVKEKDVT
TAYVNRWFLGLRFVKDLISTNINLTHDIQAFTDTLHRQAHNSKVFKEGMKVEATYSRRSQ
LPKYLPESIAATIRRSSKSSLSRKKAHAAVVMASSPSSNDLTNSNIRTESPVNSTNTSLN
NVSMTSIDSEVSRVQTPTPPPEEPTASSAAPCTSTDTPMVTSPSKPQKSDSPSSTVETKS
SEFGITRTITVHRNEIKSKKNYKTSEKRAPSPLASAIPTVNNSRMNHVRPMESNHTTPMH
IQTIPVLSRHTSAHHQSSSDTIYSTNQVSQIPSFYQTQHPIQTINRNHVMVTPFTTIQQI
PSYQAYQQIPSHVPIQMGHRQANPGNLHNMHTMRTHSEPMDLKGSSLKRPHSPIQPELVQ
IHNKLFSPQRSSTIGSGQRSGSELSDSPSHIRTVPLLKDNIKLKTKIGTHSNHR
NT seq
2505 nt
NT seq
+upstream
nt +downstream
nt
atggattcggggggcaagacatacggtattacgtcgcccatcagtttagctgagccgacg
gaaaaagaccgagtgttaaccgagaagctaatcgaacatattgaaccttatggtgtgttt
gaatctgaaagtgaacattcagctcgtcggattgtccttggaaaattaaatgaaatagtg
aaagaattcgttatgaatgtcagtgaagaaaggaaactgccccaatccttgattgacaca
gctggagggaagttgtacacatttggatcatatcgacttggtgtatgcgccaagggtgcc
gatattgacacattatgtgtggtaccccgtcatgtgaacagatccgatttcttctccgtt
ttctgcacgcttttaaaagaaagaagtgaggtgtcagagctcagggcaattgaagatgca
tttgtcccggtcatcaagttaaagtttgagggcgttgagattgacatcctcttctcccgt
cttgctctacaagttgttcctccagaccaagatcttcgagatgattcccttctcaagaac
ctggatatccgatgcatccggagtttaaacggatgtagagtcacagacgagatcctacat
ctagttccaaatattgaaaactttcgacttacattgagagttatcaaattatgggccaaa
cgtaaaggaatatacagtaacatgcttggttacttgggaggtgtatcgtgggccatgctg
gtagcaaggacatgccagctttatcccaacgccattgcctctacattggtgcaaaggttt
ttttgggtgttttctcaatgggaatggccgcgtccagtgttgctaaagcaacctgaagag
tccaacacccttaacctaccagtatgggatccccgttataacccatcggaccgacttcac
ctcatgcccattataacccccgcatatccgcaacaaaactcaacttacaacgttacccgg
tcatccctgactgtaatgaaaggggagtttattgacgggtatcgagttaccgctgagatc
cacgagaataaatcaagttggttaaaactcctggaaactccaaattttttcaatgaatat
aaacatttcattgtgctgatggcaagcgcagagtcgcaggagaactttaacttatggact
ggtctcgtcgaatcgaaaatccgtattttggtcgggtacctggaacgtaatgattatata
cttattgcacatattaatcagacggggtatcctcaggaagtcaaagaaaaagatgtcacg
acagcgtacgtcaacagatggtttctcggtctgaggttcgtcaaggatttaataagcacc
aacataaacctcacacacgatatacaggcgttcactgacactttgcacagacaagctcac
aactcaaaggtctttaaagaaggaatgaaggttgaagccacttattctcggaggagccaa
ctcccaaagtatcttcctgagagcatcgctgccaccatccgaagatcaagcaaatcatct
ttatcaagaaagaaggcgcacgctgcagttgtcatggcgtcgagtccttcttccaacgac
ctcaccaacagcaatattcgaactgaatcccccgtaaacagcaccaatacctcacttaat
aacgtgtcaatgacatccattgactccgaagtgtcgcgcgttcagaccccgaccccgcca
ccagaagagcccacggcatcttcggcagccccgtgcacgtcgaccgacaccccaatggtc
acatcccccagcaagcctcaaaaatccgattcaccctcctcaacggttgaaacaaaatct
tctgaattcggaatcactaggacaataactgtccaccggaatgagataaaatcgaaaaaa
aattacaaaacttcagaaaagcgtgccccgtctccgctggcatctgccatacccacagtg
aacaactcgcgaatgaaccacgtccgtccaatggagtctaaccacacaacaccgatgcat
atacaaaccatacctgtattatcacgacatacttctgctcatcatcagtcttcatctgat
acaatatactccaccaaccaggtctctcagattccatctttctaccaaacccagcacccg
attcaaactataaacaggaaccatgttatggtaacgccattcaccactatacaacaaatc
ccaagctaccaggcgtaccagcaaattccaagccatgtccctatacagatgggacacagg
caagccaaccctggaaacctacacaacatgcatacgatgagaactcactcggagcctatg
gatcttaaggggagttccctaaaaaggccccattcacccatccaaccggagcttgtacag
atccacaacaaactgttcagcccccagagaagttcaactattgggagcgggcagagatct
ggaagtgaattgtccgactctccgtctcatattcgaactgtcccacttctcaaagacaac
attaaactaaaaaccaaaattggaactcattctaaccacagatga
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