Ciona intestinalis (yellow sea squirt): 100186297
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Entry
100186297 CDS
T01056
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100186297
03036 Chromosome and associated proteins [BR:
cin03036
]
100186297
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
100186297
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
100186297
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
Tex_central_region
Tex_YqgF
S1
SPT6_acidic
Spt6_S1
HHH_3
SH2
RuvX
HHH_9
S1_RRP5
GARS_N
Tex_N
MycE_N
Motif
Other DBs
NCBI-GeneID:
100186297
NCBI-ProteinID:
XP_018669985
Ensembl:
ENSCING00000007691
LinkDB
All DBs
Position
12:complement(2651563..2673151)
Genome browser
AA seq
1679 aa
AA seq
DB search
MSDYVENEAEESSDEDYDVARTKPALDYDSEDEEENEKELEKEVDEEGNIAGLVDDDVEE
EEEEGDEDDSDISSDADEEEQPVEEKQRKKRSARDLRLEDDDFDLIEENLGVKLKKRKKF
SRLRTVSSDEDVSEDETDTRQAIRDELFHDDDTDTPQPAQVEPEVPLLGDDDEEGMSDES
DVNDFIVDDNGEPISKPQKGQKRRSKGDSALQHLQDIFGLDFDFEDIEKYGQDGYEDDEI
DDDSYYNEQLEETDVGEDGELRRTKKKKKSRNKKSIFDVMEPDTLERGFYTDTDAEIRNA
DVPERFQLRTIPVKPAEESELELESEWIYKYCFVEPSISKQDAIEDLGSTFSSSTLSTLN
RKPPSCVGKIQDTLNFMRNQQYEAPFISFYRKEYVEPELNIHDLFKIYHWDEKWTQMNVR
KASVTRLMQKMQTFQYEQISADPDKPLGDNVRALTDADIERVQGIQTMEEYHDIYRHFLL
HYGRDVPKMQNALRIQRQRERAENGLNPDEDAPSLASDLKQASRRHMYTVCLDAGIGGVA
NKFGLTPEQFGENLRDNYQRHETEQYPAEPMDLAEDFLCPQFSTKEAVLEGARYMVAMQL
AREPLVRQCVRQTFNERAKISVQPTKKGKKEIDEGHPCFSYKWLQNKPVKDLSGPQFLHI
KNAETENLVTMTIHIDMHGTVGSQTYFEEIKQLYYRDEFSHLVQEWNNQRSKVVEFMLQN
IIYPEMTKELKTLLYDEAKNGIKEHCALKLRSYLSVAPYQLEEREYDEDEEEERKGTVVM
AIAYSEERDSAMFAAVVSGLGEVVDFLKLPNMRFRRKSHIEEEAKRKKSDMDQLKKFMSK
RKPHVVVIGAEDRLATTIQEDVQQCVTDLEQEGVISNVAVELMDNELSSVYASTQRAQAD
FRDFPVELRQAISLARRLQDPMLEFSQLCTADQDLMCLKLHPLQDQLNKDELLEALVEEF
VFRACEVGVDVNRAITHPHTATVVQFVCGLGPRKAAHLLKVLKQKNGRLENRSNLVTVCK
MGPKIFINCAGFIKIDTKSIMEDSTDAYIEILDGLRVHPETYEWARKMAVDALEYDESAE
DANPSSALVEILESPERLKDLDLDAFAEELERQGYGNKGITLYDIRNELNSQYKDFRTPY
RSSTAEEKFEMVTKETLSNFKEGKMITCRVTGIAHRRPKSEQLDQAEPHKDEETGMWNCS
FCKTGGFAELSEVWAHLDNGECLGRAVGVKVRLEGGITGFIPTDKLSDKPVSNPEERVHI
GMTIHCRITKIDIERFQVDLTCRGSDLRDDAGSWKQQLDTYYGFEQETLDKKKLEDSNKK
SNRTTYIKRVIAHPSFHNIDFKSAEKRMQDMDQGDAIIRPSSKGSDHLTATWKVSEGVFA
HIDIREEKKENAFSLGRSLWIGNEEFEDLDEIIARFIQPMAANARDLIGHKNFREVGGKK
ELVEDLLKQAKKSAPFRIPYFISASKSLPGKFLLSYMPRARSKHEYVSINPDGYRYRSQN
FTSLNQVFKWFKEHFRDPIPTHLMNRTPAGGNSVSINTPKQRTPSIRQTPRTPKETPQQP
HTPGYPYTPNAPYITPSGSYRGQRSPAASMLPPKSIPPAKWATPSMTPKRTPKSSGRTPV
PSNADWGSRAQEWAKQQQGLKSPHMTPTTPKGPRTPASSYAGTPRTPQNRTPRGQRTPY
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattacgtggaaaatgaggcggaagaatcgtcagatgaggattatgacgttgca
aggacgaaacctgccttggattacgacagcgaggatgaagaagaaaatgaaaaagagttg
gaaaaagaggttgatgaggaaggcaacattgctggactcgtggatgatgatgttgaagaa
gaagaagaggaaggagatgaagatgacagcgatatttcatccgatgctgatgaggaggaa
caaccagtagaagaaaaacaaaggaaaaaaagaagcgctcgagatttgcgacttgaagat
gacgactttgaccttatcgaggaaaacttgggagtaaaattgaaaaaaagaaaaaagttt
tcaagattacgaactgtgtcctcggacgaggatgtaagtgaagatgaaacggatacgagg
caagcgatccgggatgaactcttccacgatgatgatactgatactcctcagcccgctcaa
gttgagccggaggttcctcttcttggagatgatgatgaggaagggatgtcggatgagagt
gatgtgaatgactttatcgtagatgataacggagaaccgataagtaaacctcagaaagga
cagaagagacgaagcaaaggggactcagctctgcagcatctacaagacatatttgggctt
gactttgattttgaagacattgaaaaatatggtcaggatggttatgaagatgatgaaata
gatgacgattcttattataatgaacagttggaggagacagatgtaggagaggatggtgaa
ctccggaggacaaagaagaagaaaaagagtcggaacaaaaaatccattttcgatgtaatg
gaacctgacacattggaaagagggttttacacggatacagatgcagaaataagaaacgca
gatgttcctgaaagatttcaacttcgtacaataccagtcaagccagcagaagaaagtgaa
cttgaactcgaatctgagtggatttataaatactgctttgtggaaccatctatttcaaaa
caggatgccattgaagatttgggttcgaccttcagctcatccactttatcaacacttaac
cgcaaaccaccaagctgtgtgggaaaaatacaggacactttaaattttatgaggaaccag
caatatgaagctccctttatcagtttctacaggaaggaatacgtggaacctgaacttaat
attcatgacttgtttaaaatatatcattgggatgaaaaatggacacaaatgaacgttcgt
aaagcgagtgttacaaggttaatgcagaagatgcaaacttttcaatacgaacagatatct
gcggacccggataaaccattgggggataatgtaagagcgctaacagatgcggatatagag
agagtacaaggcattcaaaccatggaggaatatcacgatatatatcgacactttctactt
cattatgggagggatgtacctaagatgcagaatgctcttcgtatccaacggcaacgagag
cgagcagaaaacggattaaaccccgatgaggatgctccgtcattagcgagtgatctaaag
caagcttcacgtagacacatgtacaccgtgtgtcttgatgctggcattgggggagttgcg
aacaaattcggtttaacacctgagcagtttggtgagaatctaagagacaattatcaaagg
catgaaactgagcaatatcctgcagaacctatggatctggcagaggactttttgtgccca
cagttttcaactaaagaagcagtgttagaaggggcaagatacatggtagccatgcagtta
gcaagggaaccactagtccgacaatgtgtccgtcaaacttttaacgaacgagcaaaaata
tccgttcaaccgacaaaaaaaggaaaaaaggaaatagacgaaggacatccttgtttttct
tataaatggcttcaaaacaaaccagtgaaagacctgagtggtccacaatttcttcatatt
aaaaatgctgaaacagaaaaccttgtaacaatgacaatccatattgatatgcacggaacc
gtaggaagtcaaacttattttgaagaaataaaacaactttattacagggatgagttcagt
cacttggtgcaggaatggaacaaccaacgaagtaaagttgttgagtttatgctgcagaat
atcatttaccctgagatgacaaaggaactgaaaaccctgctgtatgacgaggctaaaaat
ggaataaaggagcactgtgcgttgaaacttcgttcatatctctctgtcgccccctaccag
ttagaggagcgggaatatgatgaggacgaagaagaagaaaggaagggaacggttgtcatg
gcgatcgcttattcagaagaaagagactcggcaatgtttgcagcggttgtatcaggactt
ggtgaagtggtggatttccttaaacttcctaatatgaggtttaggaggaagtcccacata
gaggaagaagcaaagagaaagaagagtgacatggatcaactgaaaaagttcatgtcgaaa
cgaaaacctcacgttgttgtcattggggcagaggataggcttgcaactactatacaagaa
gatgtacagcagtgcgtgaccgacctcgagcaggagggggtgatatctaacgtagcagtt
gaattgatggataacgaattatcatccgtgtatgcttcaacacaacgtgcacaggctgac
ttccgggattttcccgtcgaattacgacaagcaatatcgttggctcgtcgtcttcaagat
ccaatgttagaattctctcagctttgcactgctgatcaagacttaatgtgtttaaaactt
cacccattacaggaccaacttaacaaagacgaactgcttgaagctttagtcgaagagttt
gtattccgtgcgtgtgaagtaggtgtggatgtaaacagagctataacccatccacacacg
gctactgtcgttcaatttgtgtgcggtctcggcccaagaaaagcagctcatttattgaag
gttttaaaacagaaaaacggacgtttggaaaatcgctcaaatctcgtcactgtgtgtaag
atgggaccaaagatatttattaactgcgctggttttataaagattgatactaaatctata
atggaagacagcactgatgcttacatcgagatcctcgacggactccgcgtacatccggag
acttacgagtgggcgaggaagatggcagtcgatgctctggagtacgatgagtcagcggaa
gatgcaaatccctcgtctgctctcgttgagatccttgaatctcccgagaggttaaaagat
cttgatctggatgcttttgcagaggaacttgagagacagggttatggaaacaaaggcatc
acactatacgacattcgtaacgagctcaactctcaatacaaagatttccgaaccccatat
cgttcttcaactgcggaggaaaaatttgaaatggtgacgaaagaaactttgtcaaatttt
aaagaaggtaaaatgatcacatgtcgtgttaccggcatcgcgcatcgtcgaccgaagtcc
gagcaactcgatcaagcggaaccacataaagacgaggagacgggaatgtggaattgttcg
ttttgtaaaacgggaggatttgctgaactcagcgaggtgtgggcccatcttgataatgga
gaatgcctaggtcgagcagttggggttaaagttcgtctcgaaggtggaatcactgggttt
attccaacagataaactgagtgacaagccagtctctaatcctgaagaaagagttcatatc
ggcatgacgatccactgtcgcatcacaaagattgacatcgagagattccaagtcgacctt
acatgtcggggttcggacttacgagatgacgcggggtcgtggaaacaacagctcgatacc
tattatggttttgaacaagaaactttggataaaaagaaattagaagattcgaataaaaag
tcaaacagaacgacatatataaagcgagtaatagcccatccctcattccataatattgac
ttcaaaagtgcagagaagcgaatgcaagatatggaccaaggtgatgccattattagaccc
agcagtaaaggttctgaccatctcacagcaacatggaaagtttcagaaggtgttttcgct
catattgatatcagggaagagaaaaaagaaaatgctttcagtcttggaaggtcattgtgg
atcggcaatgaggaattcgaagacctcgacgagatcatcgctcgtttcatccagccaatg
gcagcaaacgctcgagatctcattggacacaaaaactttcgggaggtcggagggaaaaag
gaactcgttgaagatttgttgaaacaagcgaagaaatccgctccattcaggatcccatac
tttatttctgcttccaaatcactgccaggtaagttcttattgtcgtacatgccgagagct
cgttcaaaacacgagtacgtgtcaatcaaccccgatgggtatcgctacagaagtcagaac
tttacgtcgctcaaccaagtatttaagtggtttaaagaacatttccgagaccccatccca
acacatttaatgaaccgaacgccggcgggtgggaacagtgtttccataaatactccgaaa
caaagaacgccttcaatacgacaaacaccaaggactcctaaagagaccccacaacagccc
cacaccccaggttacccctacacccctaacgccccgtacattaccccaagtggtagttac
aggggtcagaggtccccggcagcgagcatgttgcccccgaagtcaatacccccggcaaag
tgggccacacccagtatgaccccaaaacgaacccctaaatcaagcggcaggacacccgtt
ccttccaacgcagactggggtagcagagcacaggaatgggcaaagcagcaacaagggtta
aaaagtccgcatatgaccccgaccacacctaaagggccccgtaccccagctagtagctat
gcggggaccccaagaaccccacaaaatagaactccgcggggccagcgcaccccttattga
DBGET
integrated database retrieval system
