Ciona intestinalis (yellow sea squirt): 100186355
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Entry
100186355 CDS
T01056
Name
(RefSeq) TATA-box-binding protein-like isoform X1
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100186355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100186355
03021 Transcription machinery [BR:
cin03021
]
100186355
Transcription factors [BR:
cin03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
100186355
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100186355
RNA polymerase III system
TFIIIB
100186355
RNA polymerase I system
SL1/TIF-1B
100186355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
Motif
Other DBs
NCBI-GeneID:
100186355
NCBI-ProteinID:
XP_018668192
LinkDB
All DBs
Position
7
Genome browser
AA seq
471 aa
AA seq
DB search
MLHVIQDLIWRISKKRKWCLVMDDFGGTFFDLSASAHNSTLSNPISNMSSSSLCGGGNNF
FLQEQTSDLDTLLMSDTGLNMDNPFSNGITSNGIKSIKSEPLFSNVNELHSSSIQGMPQP
TRQDLFPNSSFSSIDSSSMHTSLEYMLDNPVSVSLESKPIKTEPSSNQSYPTKVKLVSVG
GFTGPANILSKVSIIRPGQSIQKLTGQEVISPKVPPALPQGMQAKVLATCPKVTQAEPLY
HHAVKTERPDDIVPVVKEEPLMYSNFDLQDGSKLNISVCNVVSSFRVHCHLNLRQIALEG
MDVVYRRETQKVVMRMRNPKCTAYMWSSGKIVCTGSSSAQYARQSAKRFARRLLKIGFKV
KFAEFRVVNVLAVCKMPYAIDINEFAKANRGRHCSYEPELHPGVTFRESTTKATLKIFST
GSVTVTARSVEKAKNAIRTVYPMFQEFYRFEKPNLDFDISDVLPSDTEDCS
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgttgcatgttatacaggacctgatttggcgcatatcaaagaaaaggaaatggtgtttg
gtcatggatgactttggtggaacgttttttgatttatctgcttctgcacataactcaaca
ctttcaaatccaatttccaatatgtcatcttcctccttgtgtggaggagggaacaacttc
ttcctacaagagcaaacgagtgacctcgatacactattaatgtccgacactgggttgaat
atggacaacccgttcagcaatggaatcacctcaaatggaataaaatctataaaatcggaa
cccttgttttcaaatgtaaatgaactacacagttccagcatacaaggcatgccacagcca
actcggcaagatctgtttcctaattcaagcttctcttctattgattcaagtagcatgcac
acttctttggaatatatgcttgacaaccctgtttcagtcagtttggaatcaaagccaatt
aaaactgaaccaagctccaatcagagctacccgactaaagtgaaacttgtaagcgtcgga
ggtttcacagggccagcgaatattttgagtaaagtatcaatcataagacctggacaatct
attcaaaaacttactggtcaggaagttatcagtcctaaagtacccccagcattaccacaa
ggcatgcaggcaaaagttcttgcaacttgtccgaaagtaacccaagcagaacccctgtat
caccatgctgtgaagactgaaagacctgatgatattgttcctgtggtcaaagaagaaccc
ttgatgtacagcaactttgaccttcaagatggatcaaaactcaacatctctgtttgtaat
gttgtctcatctttccgtgtccattgtcacctgaatctacgtcagatagctttggaggga
atggatgtggtttacaggcgggagacgcagaaagttgtaatgagaatgcggaatccaaaa
tgcacagcctacatgtggtcatcaggcaaaatagtttgcacaggttcaagctcagcacaa
tatgcaagacagtcggccaaaagatttgctcggcggttgttaaaaatcggatttaaagta
aaatttgctgaatttcgagttgtaaacgttcttgcagtgtgcaagatgccgtatgcgatt
gacataaacgaattcgcgaaagcaaatcgtggccgtcactgcagctatgaaccagagctt
caccccggagtgactttccgagaatccaccacaaaagcaacgttaaaaatattttccact
ggatcagtcactgtaacagcaagatctgtagaaaaagcaaaaaatgcaattcgaaccgtt
tatccaatgtttcaagagttttacaggtttgaaaaaccgaatttggattttgatatttcc
gacgttctgcccagtgacactgaagactgcagctga
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integrated database retrieval system
