Ciona intestinalis (yellow sea squirt): 100186440
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Entry
100186440 CDS
T01056
Name
(RefSeq) general transcription factor IIF subunit 1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100186440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100186440
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
100186440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
100186440
NCBI-ProteinID:
XP_002119692
Ensembl:
ENSCING00000001776
LinkDB
All DBs
Position
Unknown
AA seq
537 aa
AA seq
DB search
MAHVDEYMVRVPKHVPKKYNVMRFNASDKVDIRKWAEATLVRDMRGKKTYEEEEVYPEFG
AGSEYGRKQREEARKLKYGMKRKKFVVENQPWNLSAVTPEVDKNDKKKFNKSGDIKPKLV
TKDYTGKKEGGIGEGSMYFVFTQRPDFTFEAYPVEDWHNFNRKIQHRTLTDEEAEAAWDK
RDKIVNHLNYMARKRLHINDEEAGVNEDETGGKGNIKILKKIKKEENDLVIHDDEDLDMY
MSGSSSDSDGGSDSGKKKKKSKTVKKKKEDSENEQEEALEDSDDGEHEGTEVAYASDVSS
DQDEEENDSRVAPHGVDELEESSSSDEEEAAKNEKENDKSAGTTKQPKGSDNSGSSEDSA
SDIDEEESLSKSALFMQRRKTPPKDKGSKGSKSNSRSSTPTAELTGAHSSKSDLQSVKRK
LETGRQSPLASSMLGKRGASTSKQDGVSVKRQKTSQASSGKTTPSKDASPHGITEETVKK
YLTHKPITTKDLLKKFKKKNVGLSSEQIVEKVAMILRKLNPQKIQTNGKMHLFLRET
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggcccacgtcgacgaatacatggtacgggttccaaaacatgttcccaagaaatacaac
gtcatgagatttaatgctagcgataaagtcgatattcggaaatgggctgaagcaacattg
gttcgtgatatgcggggaaagaagacgtacgaagaagaagaagtttatccggagtttggt
gctgggagtgaatatggaaggaaacagagagaagaggcaaggaaattaaaatatggaatg
aaaagaaagaaatttgtcgtcgaaaaccaaccctggaatctttcagcagttacaccagag
gtggacaaaaatgataagaaaaagttcaataaatcaggggatattaaaccaaagctcgtt
accaaggattacactggaaagaaagaaggggggattggggagggctcgatgtactttgtg
ttcacacagagaccggattttacttttgaggcgtacccagttgaagattggcataatttt
aatcgcaagatccaacatcgaacgttgactgatgaagaagctgaagcagcttgggataaa
agggataaaatcgtgaatcatttaaactacatggcaagaaagagacttcatataaatgat
gaggaggccggagttaatgaggatgagacaggaggaaaggggaacattaagatccttaag
aagattaaaaaggaagaaaatgatcttgtaattcacgatgatgaggatctggatatgtat
atgagtgggagcagtagtgacagcgatggtggaagtgacagcgggaaaaagaagaagaag
agtaaaactgttaagaagaaaaaagaagattctgagaatgagcaggaggaagcgttggaa
gattcagatgatggagagcacgaagggacggaggttgcgtatgcaagtgatgttagtagt
gatcaagatgaagaggagaatgactcccgtgttgctcctcacggagttgatgagttggaa
gaatcctcaagcagtgacgaggaagaagcggcgaagaatgagaaggaaaacgataaaagt
gcgggaacaacaaagcagccaaaggggagcgataacagtggttcgtcggaagattcagcg
agtgatattgacgaggaagaatccctctcgaagagtgcgctgttcatgcaaagaaggaaa
acacctcctaaagataaagggagtaaaggaagcaaaagtaacagcaggtcttctactcca
actgcagaacttacaggtgctcatagctcaaaatctgatttgcaaagtgtgaaaaggaag
ttagagactggtcgtcaatctcctctcgcgtcttccatgcttggtaagcgaggtgcttct
actagcaagcaggacggggtgtcggtgaaacgacagaaaacctcacaagccagttctggc
aagacaacaccaagcaaagatgcctcaccacatggtataactgaggagacagtgaagaag
tatctcacccataaaccaatcaccaccaaggacttacttaaaaagtttaagaagaagaat
gtcgggttaagtagcgaacaaattgttgagaaagtagcaatgattttacggaagttaaac
ccacagaaaatacaaaccaatggaaaaatgcatttattcttgcgcgaaacttga
DBGET
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