Ciona intestinalis (yellow sea squirt): 100186450
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Entry
100186450 CDS
T01056
Name
(RefSeq) HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100186450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100186450
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
100186450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
MMR_HSR1
GTP_EFTU_D2
HBS1_N
AAA_22
Motif
Other DBs
NCBI-GeneID:
100186450
NCBI-ProteinID:
XP_002120940
Ensembl:
ENSCING00000005592
LinkDB
All DBs
Position
1:complement(6500048..6505568)
Genome browser
AA seq
729 aa
AA seq
DB search
MARHRTIRNNKSYDYSDDDDVYGQSYEDDYGVSPGTMAQYSYSRSRGKEVQISSYMPSEE
TVEEEIWEDDVCFASSAAHQRHRSSGSVDTSTVEPLILDACLEQIRDAVGESYSENQMRL
ASVKFQCNYEKAIDYLLNLSNSEPGSSQGKSKTAAEKQVAQNSNDEVGLPQRLPRTSGRG
KSVLVITKQDDTSKHLASPIPAKKNELNVTKVESNSTTPVKTGFVMSPNRLNQPKTPVPH
MNGGLDPEAKSSSQQESKPVSLLTPNRKNKLQSTPVSTPSKQNKSTIDYKKEYEKREIDE
KPQISLVVIGHVDAGKSTMMGHLLYQQGVVSKRLIHKYEQESKKIGKSSFAYAWVLDETG
EERSRGVTMDVAHNRFETEHRVITLMDAPGHRDFIPNMITGASEADVAVLVIGASTGEFE
AGFGIGGQTREHALLIRSLGVSQLAVAVNKLDTLNWSQKRFIEIVEKMKQFLKQAGFKDS
DVTYVPVSGLLGENLISKATDPQLTSWYNGPSLIDVIDKFRAPQRPIELPFRFCVNDVFR
GQGSGISINGKIESGGISPGTKVIVMPAGEKGLIKGVESNDGISNAEFALAGEHATLTLH
GVDIMKVTTGSVICDIDNPIRAITRLQARVIVFNIEVPITRGFPVELHYKSVHEPAVIRR
LLSQLHKSTGEVIAKKPKFILKGQNALVEVELTRPVCLEEYSSLKELGRFTLRYGGSTIA
ACVVTQLLR
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggctcggcatagaacaatacgcaacaacaaaagttatgactattctgatgatgatgac
gtgtacggacagtcctatgaagatgactatggtgtgtctcctggaacaatggcccagtat
tcatactctcgatccagaggcaaggaagttcaaataagctcctatatgccctcggaggag
actgttgaggaggaaatatgggaagatgatgtttgttttgcatcttccgctgcacatcag
cgtcatcgttccagtggttccgtggacacaagcaccgttgagccacttatattagatgcg
tgtttggagcaaattagggatgctgtgggtgaaagctactcggaaaaccaaatgagactc
gcctctgttaagttccagtgtaattatgaaaaagcaatcgactatttgcttaatctttcc
aacagtgaacctggcagctcacaggggaaatctaaaactgctgctgaaaaacaagtagct
cagaattctaatgatgaagtggggttgcctcaaagattgccccgcacaagcggacgtgga
aagtctgttttagtgataacaaagcaagatgacacttctaaacatctcgcctcaccaatt
cccgctaaaaagaatgagttaaatgtgacaaaagtggagtccaactcaacaactccagtc
aaaaccggttttgtaatgtctccgaatcgattaaatcaacccaaaacacctgtacctcat
atgaacggaggtctagatccagaagcaaagtcttcttcacagcaagaatcaaaacctgtt
tctcttttgacacccaacaggaagaacaaacttcaatctacccccgtttcaactcccagc
aaacaaaacaaatcaaccatcgattacaagaaagaatatgaaaagcgtgaaatagatgag
aagccacagataagcttggtggtgataggtcatgtagatgctggcaaatcaaccatgatg
ggacatctcttgtaccagcaaggtgttgtatcaaagagacttatacacaagtatgaacag
gaatccaagaaaataggcaaatcgtcattcgcatatgcatgggtgcttgacgaaactggt
gaagaaagatcacgcggagttacaatggatgttgctcataatagatttgaaaccgaacat
cgagtcatcactttaatggatgcaccaggacatagagattttattcccaacatgattaca
ggtgcctcagaggcagacgttgctgtattagtgattggagcaagcacaggagagtttgaa
gctggctttggcatcggtggacaaactcgtgaacatgcactgcttattcgatcactaggt
gtctcacaacttgcagttgctgtgaataaactcgacactttaaattggagtcaaaagaga
tttattgaaattgttgaaaaaatgaaacaatttttaaagcaagctggttttaaagatagt
gatgttacatatgtccctgtgagtggtttacttggggaaaacctcatctcaaaggccaca
gatccccaactaacgtcgtggtataatggtccatcactaattgatgtaattgataaattc
cgagccccacaaagaccaattgagcttccgttccgattttgtgtgaatgatgtttttcgt
ggacaaggtagtggaatttcaatcaatggtaaaatagaatctggtggaatcagccccggt
accaaggtcatagtaatgcctgccggtgaaaagggattaatcaaaggagttgaatctaat
gatggaatttccaatgctgagtttgcattggctggtgagcatgccacacttacattacat
ggagtggatattatgaaagtcaccactggaagtgtaatctgtgatattgacaatccaatt
cgtgcaataactcgtctgcaagcaagggtgatagtttttaatattgaagttccgatcacg
cgaggatttcccgtcgaactccattacaaatccgtccacgagccagcggtgatccgcagg
ttgttaagtcaacttcataaaagcaccggtgaagttattgcgaaaaaaccaaagtttatt
ttaaagggtcaaaatgctcttgttgaagtagagcttactcgaccggtatgcctggaagaa
tatagttccctcaaagagcttggcagattcacattaagatatggtggttctactatcgca
gcgtgtgtggtaacgcagctgttgcgctag
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