Ciona intestinalis (yellow sea squirt): 100186494
Help
Entry
100186494 CDS
T01056
Name
(RefSeq) organic cation transporter protein-like
KO
K08202
MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
cin02000
]
100186494
Transporters [BR:
cin02000
]
Solute carrier family (SLC)
SLC22: Organic cation/anion/zwitterion transporter
100186494
Major facilitator superfamily (MFS)
Organic acid transporters
Organic cation transporter (OCT) family [TC:
2.A.1.19
]
100186494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sugar_tr
MFS_1
TRI12
DUF1440
Motif
Other DBs
NCBI-GeneID:
100186494
NCBI-ProteinID:
XP_009860662
LinkDB
All DBs
Position
13:complement(359597..368494)
Genome browser
AA seq
583 aa
AA seq
DB search
MIQFDVLLNRLGGAGLSQVIIFVLLGYFNVPGGFNALATVFIAYIPDSRCNVPPLDNATA
YPNLTEPDILNYTTPYDATKLAYDTCSRYGYDLNACNGDLTCVNQSYPVVVCDKGYYYDK
AMFTETVVTEFNLVCDRKYLGSLSTSLYYAGMMIGSILFGNFADMFGRKPTMVLTFIGVL
GSMFGVTYSTSVEMYMAFRTATAAFGYGTTIGTFVYITEVVGNKWRTFFGIGYQVFFALG
YMIMSGVAFNWRNWHDNMLVSTLLSIPFLLFAIIVPESPRWLFTKNKDKEGIKVTKLLAR
INKVTITDEDWEEARRAGDEQEKAKEGTSERKYTIIDLFRHRGTCIITIKVMFNWFVNSF
VYYGISLNAGALAGDIFVNNTLNGVMEIGSYVLCILLMDRIGRRILLSGMMFLSGIGLII
SLVVNEYKGSNQGLETLSLVFAFAAKIGISGSFAIIYNLTSELYPTVVRSNGVGAGSLMA
RVGGIIAPFLIALQDDVTWLPNAIFGIFALLAGLASLTFPETNGHKMMETIEEAEIFYKT
GKIISWDESVSSSNDVSMEKSDVGHDNAGFSSIGENETKTAKF
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgatacaattcgacgttcttttaaatcgtttaggcggggctggactctcacaagttatc
atatttgttctgcttgggtattttaacgttccgggcggatttaatgcgttagctactgtg
tttattgcctatataccagactcaagatgcaacgtaccaccgttagacaacgctacagct
taccctaaccttacagaaccagatattttaaactacacgacaccatacgatgctactaaa
ctagcatacgatacatgtagcaggtacgggtacgacttgaatgcatgtaatggagacctg
acatgcgtcaatcaatcttacccggtagtcgtatgcgataaaggatattattatgataaa
gcaatgttcacagagaccgtggtcactgagtttaatctagtatgcgatcgcaaatacctt
ggttccctctccacgtctctctactatgctggtatgatgataggttcgattctctttgga
aactttgctgacatgtttgggcgcaaaccaacgatggtgctaacgtttattggggtgctt
ggttcaatgtttggggttacttattcaacgtccgttgaaatgtacatggcgtttcgcacc
gctacagctgcatttggttatggaactactattggaacttttgtttacattactgaagta
gtaggaaacaaatggcgcactttctttggcatcgggtaccaagttttcttcgcactagga
tacatgataatgtcaggtgtggcatttaactggaggaactggcatgataacatgttggta
agcaccttactgagtataccgtttctacttttcgccatcattgtaccggaatcgccacgt
tggttatttacgaagaataaagacaaagaaggaattaaggtgacaaagttgttggcaagg
ataaacaaagtaacgatcactgatgaagattgggaagaagctagacgagccggagatgaa
caagagaaagctaaagaagggacttcagaaagaaaatacacgataattgatctatttaga
catcgtggaacgtgcattattaccataaaagtaatgtttaactggttcgtgaacagtttt
gtatactacggaatttcattaaacgccggtgcgttagcgggggatatttttgtaaacaac
acattaaacggagtaatggaaattggatcctacgtattatgcattttattgatggacaga
attggacgacgaattttgctttcggggatgatgttcttgtctggtattggtcttattata
agcctcgttgtcaatgaatataaagggagcaatcaaggtcttgaaactttaagtttagtg
ttcgcatttgcagcgaaaattgggatctctggttcctttgctatcatatacaatctaaca
agcgagctgtatcccactgtagtaagaagcaatggtgtgggagcgggatcattaatggcg
cgtgtcggtggaataattgcgccatttttgatcgctttgcaagatgatgtaacatggttg
cctaacgctattttcggaatatttgctttattagctgggctcgcatctttgactttcccc
gaaacaaacggtcataaaatgatggaaacaattgaagaagccgaaatattttataaaaca
gggaaaataatcagttgggatgaaagtgtatctagttctaatgacgtcagtatggagaag
agcgacgtgggacatgacaacgcagggttctcatctatcggggaaaacgagacaaaaact
gcaaaattttaa
DBGET
integrated database retrieval system
