Ciona intestinalis (yellow sea squirt): 100186522
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Entry
100186522 CDS
T01056
Name
(RefSeq) short transient receptor potential channel 4-like
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cin04040
]
100186522
Ion channels [BR:
cin04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
100186522
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ank_2
Ank_3
Ank_4
Ank
PKD_channel
Motif
Other DBs
NCBI-GeneID:
100186522
NCBI-ProteinID:
XP_002127225
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Position
2:complement(7261109..7281687)
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AA seq
914 aa
AA seq
DB search
MLKRNPSSASETSTETLTPDSFTLDILPGKARDSGDVTNTGNDVTDSESISSSYDVTDSA
DCVVETSSAMNLRRMQSFDRRSSSSSSSSLLSTYDNHDDVIDDVTQQPDENNSPQMSDTP
KQDTTQYKRGNGRVNANALKEMRQNLRPIKPGIKPPRIRITSPAAEWAAKRKNKAIYNIN
RDLTNKIKGGWKIRQAIANLKPNQSVNSLFLETVASGAAREVRAIFSLAKIDNSIGFEPN
CVNQHEKSALLLAIENNDIDMCELLLEHKVVLRDSLFHAIELNFLAGVETILKHNASIDA
RIVGESSYFLAGITPMILAAYNNNYEILKLLNKFGHELKESVDWWDGIHFAWESANERQM
ICKAKASPAYITLMYELGRIKPMEYCIDMVKHLRKNACIEHEFSDFYNELETQVETFMCN
ILDQVRSSEELACLFKYDFVPMSSDKESFKQVFNGDGSLARRKLECRLMLLDQTSDIRLV
KFVTHHNSQLALAYMKYRYTPFLRSGHIILRSLLQVFIGLLFPLWSLVYVIAPASKIGSF
ITLPAVSFECHIMSDVMFIFILIGNIISKSVSTHYLGAPPTALEWLTLLWIIGKWVQEAQ
ECFNRGWNSYFGDWWNYNDLWHLLLFSVAIVFRCVDYTMYHGDEIHANSTHVLRTEWSAY
EPRIISEGLLSWAYVFIFLRLLSLTRSNRNLGPLQVSLARMIVDVVQFLCIFGLVMFAFA
LGLSELYWFYGTNESKVMLCGNGTSASECVQHSSPFSSIGCSLQDLFWALFGHIDIAVLS
LSGKHQFTEIVGRSLVATYHVVAIIVMLNMLIAMMSKSYERTSENEEIEWKFHRTAMWIR
FIRREVIRPPPMNVFPNPHRCSENFERIRNACFGGAPPKLDNEEEEEILMEEQHELVQQK
LIRRYKFKCLINQY
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaacgtaacccgtcatccgcgtcggagacgagcacagaaactttaacaccggat
tcttttaccctcgacattttgccaggaaaggctcgagacagcggtgacgtcacgaataca
ggaaatgacgtcacggattcagaatccatatcgtccagctatgacgtcacggattcggct
gattgcgtagttgaaacgtcatcagcaatgaacctgaggagaatgcagtcgttcgaccgt
cgatctagttcctcttcgtcctcttccttgttatcaacttacgacaaccacgatgacgtc
attgatgacgtcactcagcaaccagacgagaacaactcccctcaaatgtcggatacacca
aaacaggatacgactcaatacaaacgtgggaatggtcgagtgaacgccaatgctctgaaa
gaaatgagacagaatttgcgaccgatcaaaccaggtataaaaccaccccgtattcgcatt
acaagcccagctgctgaatgggcggctaaaaggaaaaacaaagctatttacaacattaat
cgggatttgaccaacaaaatcaaaggcggttggaaaataagacaagctatagctaatctt
aaaccgaaccagagcgtcaactccttgtttcttgaaactgttgcgtcaggggctgcgcga
gaagtgagggcgattttctcacttgcaaagatcgacaattccatcggttttgaacctaac
tgtgtaaaccaacacgagaagtcggccctgctgcttgctattgagaataacgatattgac
atgtgcgaattattgctggaacataaggttgtgcttcgagattccttattccatgcaatc
gagttaaactttcttgctggtgttgaaactatcttaaaacacaacgcttcgattgatgca
cgaatagttggggaaagttcatatttcttggcgggaatcacacccatgatactagcagct
tataacaacaattatgagatcttaaaacttttgaacaagtttggtcacgaactaaaggag
tctgttgattggtgggatggaatccacttcgcttgggaatcagccaatgagaggcaaatg
atttgcaaagcgaaggcgagccctgcgtatattactttgatgtacgagctcggtcgtatt
aaacccatggaatattgcatagacatggtcaaacaccttcgcaaaaacgcgtgcattgaa
cacgagtttagtgacttttacaacgaacttgaaacgcaggtggaaacgtttatgtgcaac
atacttgaccaggtacggtcctcagaagagttagcttgcttgttcaaatacgattttgtg
ccaatgtcgagtgacaaggaatcatttaaacaagtatttaatggcgacggttcattagcg
agaaggaaacttgaatgcaggctgatgttactggatcaaaccagcgatatccggcttgtg
aagttcgtcacccaccataattcacaacttgccctcgcatacatgaagtacagatacacc
ccattcctcagaagtggacacatcattcttcgatcgttgcttcaagtttttattgggctt
cttttcccattgtggtcgctcgtgtacgtaatagctccagcatccaagattggaagtttc
atcactttacccgctgtatcattcgaatgtcacataatgtctgacgtcatgtttatcttt
attttgatcggaaacatcatcagcaaatcagtttcgactcattacttgggtgctccgcct
acagcattggaatggctgaccctgttatggattatagggaaatgggttcaagaggcacag
gagtgctttaatagaggatggaacagctattttggagattggtggaattacaatgacttg
tggcatttattgctcttcagtgttgccattgtatttcgatgcgttgattacaccatgtac
cacggtgacgaaattcatgcgaattctactcacgttctgcgcaccgaatggagtgcttac
gaaccaagaataatatcagaagggttgctgtcttgggcttatgtctttatatttctacgt
ttactaagtttaacaagatcgaacagaaacttaggccccctacaagtatcgctggcgcgc
atgatcgtcgacgtcgttcaatttctatgcattttcggacttgtgatgtttgcctttgct
ttaggcctcagtgaactgtattggttctatgggacaaatgaaagcaaagttatgctgtgt
ggaaacgggacttctgcctcggagtgcgtgcaacattcgtcaccgttttcaagcataggc
tgctccctgcaggatttattctgggcgcttttcgggcacatcgatatcgcagtgctgtct
ttatcagggaagcaccagttcactgaaattgtcgggcgttcattggtcgctacatatcac
gttgttgctataatcgtaatgttaaacatgttgattgcgatgatgtcaaaatcatatgag
agaacaagcgaaaatgaggagatcgaatggaaattccaccgaacagcaatgtggattcgt
ttcattcggagagaagtgattcgtcccccgcccatgaatgtgtttccgaacccgcacaga
tgttcggaaaacttcgagagaattcgaaacgcctgtttcggaggagccccgccgaaactc
gataatgaagaagaggaagaaatattgatggaggaacagcatgaacttgttcaacagaaa
ctgatacgtcgatataagttcaaatgcttaatcaaccagtattaa
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