Ciona intestinalis (yellow sea squirt): 100186555
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Entry
100186555 CDS
T01056
Name
(RefSeq) pumilio homolog 2-like isoform X1
KO
K17943
pumilio RNA-binding family
Organism
cin
Ciona intestinalis (yellow sea squirt)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PUF
PUF_NOP9
Motif
Other DBs
NCBI-GeneID:
100186555
NCBI-ProteinID:
XP_018670298
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All DBs
Position
14:3218086..3227226
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AA seq
1043 aa
AA seq
DB search
MQRPNNGGGGGPGSGLWNVQDINMGSASKPFVGQSYRYVNPNQPPPHYKTGWGQSDQEAM
AQQHAVWQNDNNSSQNTSDQSRSFLGTEQWGRESGGPTWGTNTTAATEQNTVTSARPPEQ
GVFTRHNVSDSWLSSRKSPVYQSMPVEAAGQEEKTLEAEESSQSPVEGVHDRSDKENSGP
SRDNSPDEGAKEFKDKSRSPSPKDEIENETEENTEAAADAPDEPSAVTPDDAEGVSPEAS
SFQGETPSVSAEEVTDQMQQMSLVDSYMAAQQQQQQTIAAHLSGYQLAMQQQYALATPGM
FLPSSYIIPAQANAQAGYTDPNTQSQVPLMAPYNPYAGWPTAGMYPTMLQQQVAAMTAAQ
GSAPATSHPNRALSETPQSRPLSPSSIPQQDGPPAQSEILANMAAMQQSNLNQAMAMAAA
YPMIPSAYYDQTGALIINNSRTGGPVRLFAPGPMFMNGSQHPLMAPPIAGANGSMFRYNQ
ASQQQAATAVYANQQNLSGGSTPLPSISQGYNPNIQQSGPFGSTSNISSLGIGALGAGIG
SASSTPQRRDSFSDYPKQYGGVSQFYSSLGVSPGSGGVGAMSPSPGPLSNMMGHSHHNLN
TPPPSMSSPSGNLLLGGNGNRMFSAAPGAEAKYRNGPPMSQSIFGSSGSSLFPPTRIQPP
NSKVLLPPTGRSKLLDDFRNNRLTNPHLHELVGHIVEFSQDQHGSRFIQQKLERATPQEK
QLVFNEIIGAAYQLMTDVFGNYVIQKFFEFGSLEHKLALANCIHGHVLPLALQMYGCRVI
QKALECIPQEQQVEIVKELDGHLLKCVKDQNGNHVVQKCIECVPPAQLQFIVDGFKGQVV
GLSSHPYGCRVMQRILEHCNEDQTGPILEELHQHSEMLVKDQYGNYVIQHILEHGRTENK
NQIINELRGRILTLSQHKFASNVIEKCVSHSSPQTRAWLIDEVCQEPDALFIMMKDQYAN
YVVQKMLDVADPQQKKLLIHKIRPHILTLRKFTYGKHIITKLEKFFLRSSGNSPGPSLNT
GPAAEISQSQIATSNWVHNAGSE
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagaccaaataacggtggtggtggtggacctggaagtggtttatggaatgtccaa
gatataaatatggggtctgcttcaaagcctttcgttggacagagttacagatatgtgaat
cctaaccaaccaccaccacactataaaactggttggggtcagtcagaccaagaagcaatg
gcacaacaacatgctgtctggcaaaatgataataactccagtcaaaacacttcagaccaa
agcaggtctttccttggcacagagcaatggggtagagaatctggtggaccgacttggggc
acgaacacaacagcagctacagagcaaaacacagtaacatctgcacgtccgccagaacag
ggagtttttacacgacacaatgtttccgattcttggttgtctagtcgaaaatcacctgta
taccaaagcatgcctgttgaagcagctgggcaggaggaaaaaacccttgaagctgaagaa
agtagtcaatcgcccgttgaaggtgtacatgaccgctcggataaagaaaattcaggacct
agtcgagataactctcctgatgagggcgctaaagaattcaaagataaatcaagatcgcct
tcgccaaaagatgagattgaaaatgagactgaggaaaacacagaagctgcagcggatgcc
ccggacgaaccttccgcagttacccctgatgatgctgaaggtgtttccccagaagcaagt
agctttcagggggaaacaccgtccgtaagcgctgaagaagtcactgatcaaatgcagcag
atgagtttagtggattcttacatggcagctcaacagcagcaacaacagacgatagctgca
catttaagtgggtaccagcttgccatgcagcaacaatatgcattggctactccaggaatg
tttctacccagctcctacattataccagcacaagctaatgctcaagcaggttatacagac
ccaaacacacaaagccaggtgcctctcatggccccatacaatccatatgctggctggcca
actgcgggaatgtatcctaccatgctccaacagcaagtggcagccatgactgcagctcaa
ggaagtgcaccagctactagccacccaaacagagcactgtccgaaacaccccagtctcgt
cctttaagtccatcctccataccacaacaagatggacctcctgctcaatcagaaatcctc
gctaacatggctgcaatgcaacagagtaatttaaaccaagcaatggcaatggcagctgcc
taccccatgatcccatctgcctactacgaccaaactggagcattgataattaacaacagt
agaactggtggtcctgtccgtctatttgcaccaggccctatgtttatgaatggatcgcaa
cacccattaatggcacctccaattgctggggccaatggttcaatgttcagatacaaccaa
gcttcgcaacagcaagcagcaacggctgtgtatgccaaccaacaaaatctaagtggcgga
agcacccctttaccttcaatcagtcaaggttataaccctaacattcaacaaagtggtccc
ttcggcagcacaagcaacatcagtagtctaggaattggagctcttggtgctggcattggc
agtgccagttccacacctcagcgtagagattcattctctgattacccaaagcaatatggc
ggcgtgtctcagttctacagctcacttggtgtatcacctggcagcggaggtgtgggtgca
atgtccccctcccctggcccactaagcaacatgatgggccatagtcaccacaacctaaac
acaccaccaccttcaatgtcatcaccatcaggcaacctcttgctgggtggtaatgggaat
cggatgttctctgctgctcctggtgcagaagcaaagtacagaaatggtcctccaatgtcc
cagagcatctttggcagctctggaagttccttgtttcctcccactcgcatccaacctccc
aacagcaaggtcctcctcccaccaacaggaaggagcaagcttctggatgactttcggaac
aatcgtctcactaacccccatcttcatgaacttgtaggacacattgttgagttctcacaa
gaccaacatggatcaaggttcatccagcagaagttagaacgtgccaccccacaagaaaag
cagcttgtatttaatgaaataatcggagcagcttatcagttgatgactgatgtatttgga
aactatgtcatacagaagttctttgagtttggttccctggagcataaacttgcacttgca
aactgcattcatggtcatgtccttcctcttgctttgcaaatgtatggatgccgtgtaata
caaaaggcattggaatgtataccacaagaacaacaggtggaaatagtgaaggagttagac
ggacacttgctcaaatgtgtgaaagatcagaatggtaatcatgttgtacagaaatgcatt
gaatgtgttcctcctgcccaactacagtttatagtagatggtttcaaaggccaggttgtt
ggtttgtcttctcatccatacggttgccgtgtcatgcaaagaatattggagcattgtaat
gaagaccagacaggacctatacttgaagaacttcaccagcactctgagatgttagtgaag
gaccagtatgggaactatgtgatacagcatatactggagcatggtcgtactgaaaataag
aaccagatcatcaatgaattgagaggaagaatactaactttgagccaacataagtttgca
agcaatgtgattgagaaatgtgtaagtcactcctcaccgcagacacgagcgtggttgatt
gatgaagtttgccaagaacccgatgctttgtttataatgatgaaggatcaatacgctaac
tatgtcgtgcagaaaatgttggatgtagctgacccacaacagaagaagttattgatccac
aagatccgaccccacattcttactctgcgcaagttcacttacggcaagcatatcatcacc
aaactggagaagtttttcctgagatcctccggcaattcacctggaccatccctcaacaca
ggccctgcagcagaaatctctcaatctcaaattgcgacttctaattgggtccacaacgct
ggtagcgagtaa
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