Ciona intestinalis (yellow sea squirt): 100186606
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Entry
100186606 CDS
T01056
Name
(RefSeq) iroquois-class homeodomain protein irx-5-like
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100186606
Transcription factors [BR:
cin03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
100186606
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
Motif
Other DBs
NCBI-GeneID:
100186606
NCBI-ProteinID:
XP_018666653
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Position
3:complement(5760622..5765911)
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AA seq
639 aa
AA seq
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MLVAQPLDVGLSKTCAYPRKISTYSAGEENAIPGQMQTDFPGLKMYPNQTLPMGSHYNTA
LPTDMGTNGVLPPHYGQSCIDQTQYYSSTTPNYDGPREIGDTWSTRSYNHQRYAPYNYAP
QYTYDGYQPEINDQSHRKSATRESTNTLKAWLQEHKKNPYPTKGEKIMLAIITKMTLTQV
STWFANARRRLKKENKMTWVPKNRSNENTQVGDDKKQGMEDGNEDVATDNEDFDLNVDSN
EPDKMANNNTATSPHTFNQSSMPATISSLQQNSAVDPISTTAITHSSYNQNATKHNAIWS
PGNDNHTSYPTKCPDNVGDSHLNLPPSFRGSYSDDQFSAISRQQQTPSVVSPSMISGVDL
PGRIGECRYPSVQNWVDGVYHSAIPPTPDPDSTTCHPISTERRNSIDGRIEVDRLQGVSP
SSPHFQHQQFPCTQASQNINTFNGYHSHDTYSNPHLVNQNCINRGMPQQKSYPYTHSNHG
YSTQQSMLLHHSPIANHSGDFSYASSAHASPSSASGSSPVSQQLCQSEQPLASRLVPSSY
HANPGMSVSATNPSTFPGQYYQMSGDQLTMEHPHVTNSCTENYILPGTISSSQQSNHNTY
LPNDASINVAPHHQDNAVRSHPTSASLCKTNVMSNLTAR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcttgttgctcaaccactggacgttggtctcagcaagacctgcgcctaccctcgaaaa
atcagtacgtattctgcgggagaagaaaacgcaattcccggccaaatgcagacggatttc
ccgggcctgaagatgtacccgaaccaaacactgccgatggggtcgcattacaatacagcg
ttaccaacagatatggggacgaatggagtgcttccaccacactacggtcaatcatgtatt
gaccaaacacagtattactcgtccacgactccaaactacgatggcccacgcgaaattgga
gacacctggtcaacccgtagctacaaccaccaacgctatgctccgtacaactacgcacct
caatacacctatgacgggtaccagccagagataaacgaccaaagccacagaaaaagcgca
accagggaatccactaacacactgaaagcttggcttcaggaacacaagaagaatccctac
cccaccaaaggcgagaaaataatgctcgccattataactaagatgactctgacccaggtg
tcgacttggttcgcgaacgcgcgtcgtcgcctcaagaaggaaaacaaaatgacgtgggtc
ccaaagaaccgctctaatgaaaacacccaggtcggcgatgacaagaaacaaggtatggaa
gacggcaacgaagacgtcgccacagacaatgaagatttcgatttaaacgtggactcaaac
gaacctgacaaaatggccaataacaacaccgcaacctcgccccacacgttcaaccaatcc
agtatgcctgctacaatctccagtttgcagcaaaactcggcggtcgatccgatttcaaca
accgccattacccattcatcgtataatcaaaatgctacgaaacataacgcaatctggtca
cctggcaatgacaaccacacatcgtacccgacaaagtgcccggacaatgtcggagattct
catttgaaccttcctccatcgttccgtggttcctacagcgacgatcagttctctgccatc
agtcgtcagcagcaaactccgtcggtagtgagtccttccatgataagcggggttgacctt
cctggaagaatcggtgagtgcagatacccgtctgttcagaactgggtggacggggtatac
cacagcgcgatcccgccgaccccagacccggattccacaacttgccatccgatttcaacg
gaaaggagaaattcgattgacgggagaatcgaagtcgatcgtttgcaaggagtgtcgcct
tcctccccacatttccaacaccagcagttcccatgcacacaggcgtcccagaacatcaat
accttcaacggttaccattcccacgacacttactcaaacccgcatctcgttaaccaaaac
tgtataaacagaggaatgccacaacagaagtcatacccatacacccatagtaaccacggt
tattccactcaacaaagcatgcttctacaccatagtcctattgccaaccacagtggtgac
ttctcgtacgcttcctcggcccatgcctcgccatcatctgcatctggtagttcaccagtt
tcgcagcagctctgtcaatccgaacaaccattggcgagtcgacttgttcccagttcttac
cacgccaatcccgggatgtccgtttctgcaacaaatccaagtactttccctggtcaatat
taccagatgagcggagaccaattgaccatggagcacccacatgtcaccaacagctgtact
gaaaactacatcttgccaggcaccatttcatctagtcagcaaagcaaccataacacctat
ctcccaaatgacgcttcaataaacgttgctccacatcatcaagacaacgctgtcaggtct
cacccaacgtcagccagtctctgcaagacgaacgtgatgtccaatctgaccgctaggtag
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