Ciona intestinalis (yellow sea squirt): 100186631
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Entry
100186631 CDS
T01056
Name
(RefSeq) multiple PDZ domain protein isoform X1
KO
K06095
multiple PDZ domain protein
Organism
cin
Ciona intestinalis (yellow sea squirt)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
L27_2
Pribosyltran
Motif
Other DBs
NCBI-GeneID:
100186631
NCBI-ProteinID:
XP_018667521
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All DBs
Position
5:complement(3700137..3728893)
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AA seq
2061 aa
AA seq
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MPSQEELEKAALIIKRIQNQLKRQGDYSNDAELEAMKSLMESPLFKKMAQLQASIQQLKK
EVKKDDFDINNVEFSHENGGLVVDGKEVENDSSMFNGRNGDLEEFIKSAAQGRETEMIEI
FKSENEGLGFSVVGLKSEHRGDLGIFVQDIRSGGVADRDGRLKESDQILVINNQPLTQTI
SHQQAIGILQKVKGTVKLVVARGGIPQSQGHLSAEGSQVSRSSSILSSLSQASGMPPDTK
WTDVETIDLRNDGRGLGFGIVGGRSTGGVVVKTIVPGGAAHEDGRLKSGDHILRIGEEDL
MNMGSEEVAQVLRQCGAHVRLIVARGPVDDDDDVNDDLQDDKQDAGERGSVSSEDDSHSS
YSSSSQEENSLPADAQIFDVELVKDAKGLGITIAGFLPEDQNRNGTPGIYVKGVSSGSAA
DIDGRIRPGDKLIAVDGKRLDGDDVSSDQAVEVLRSTGVVVRLTLARTTNRNETQNKSQP
VSRQIVNERLQQEKEFGQELSPDEEERIKQKWRVVMGPQCDIVIAQLKKYNYLSGLGISL
EGTVDENEMPHHYIRSILPEGPVGQSNKLEAGDELLEVNGNHLLGLSHVEVVVILKELPL
TVRMVCARPKEHWTRDPARDSVVFEEKDGDFLEMKMPPINDPMNIIPPAHENVDDDTSSD
SSLSQDSISQIQMHLPEMPPMQNQVYESELPTPVNQFHPQSSVSDSDETDVETSPKNEQE
QLNSAWEDEVTVIELEKGDRGLGFSILDFQDPLHEDKTAVLVRSLVDGGIAEQDGRLEPG
DRLIFVNDKSLQFADLDQAVRVLKAVPQGRVLIGVTKPRPMFRVPPSSDSEDAVEEEEVR
TPVLPRPPSVRSSSSSSSSTSQEMQHYPMPSDSQYSASPVEMEVKLPGPPPPPPHIEPNP
PTPEYEPPTPRYEPPTPRYEPPAHHFEPPQPQIVSEPLQQSYEPPIQRYEPPQPQTPPES
PPAAPHVIRTQSGKYTVKDYNRPARLSSSETNPVTTANQKVEVKQVQMSGMTAIAVTANT
IQRKEEPQQPIIRQQEVFSSAPVVPPKPVGYTAPSWQTAEPEKPKPKPPIDGFERIVQMS
KGKSSLGITVSPDKEGDGLIVRSVITGGAVARAGEPNIGDMIRRVNNDSATGLGAAQARS
LIRNHSAYSADVKIAYIPKKYIEAFKLGLPVPEDSDVDEDRRTPKTPSRVDHFAALKSVF
EMQNGQQPQDASKFYLDSSLWGSTKRVDIRREAGQSLGISIVGGKNINANSQQQISLDNG
DLIDGIFIKEIIEGSPVDVNGEMKPGDKILKVDGVDLSNATHEGAVEAILKAGVHVVFHV
QTFVGHPKQIILNSKSCTHFTGGKLMEPPPPQPEEESEIVKAERKYGHLPGEIHVVEMVK
GPAGVGLSLAGNKDRSQQQIFVVGVNPNGAAGKDGRVKVGDQLLEINHVPLNQRNNHELA
SNVIKNAKSKLLFVINRQQKEARADKPLKKTPSVESSSHRRQSSDVPAEKSPPPPKRSSS
GGRHSPFSDVRVIKLVKDFQGLGFAISETPTGIVVQSIAPGGTADRDGRLVRGDHILAVD
DQSVSGVSYETAISILKQSRGTVKLTVASGPVKSSASSDASSVTSSGHRLSTMSPTLDSG
SENSDPLTCPIIPGRETTIEINKGKAGLGVSIVGGSDSLLDAVLVHTVYEQGAAAKDGRL
WPGDRILTVNNHSLRHATHDEAIEVLRNTPGKVHLTILRDENRETINNESESDIYDIYDV
NLMKKSGRGLGLSIVGRKNAAGVFVSDLVQGGAAARDGTMKPGDQILSVNGVNIRMAGQE
VAAQLLKNAQGKVDLRIGRLKSGAPSDLIKMPKLSLSSNASEDAPKSPTDDLGGDIRFVE
IDKTPTQPLGISIAGGVGSPLGDVPIFVAVVQNHGAAAGKLKVGDRIRSINGQTTDNKSH
DEVVAMLKGQDDAIVLMQVQEGGESIKQLSEYLVQSAKPNLPISGQQGSQEKKEIDIELN
RGSDGLGFSIVGGHGSPHGDLPIYVKSVFSVGAAAVDGRLRRGDRIVSVNGEKLDGYTHE
EAAEALKRRATRIILRVVPST
NT seq
6186 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgcaagaagagcttgaaaaagcagctttgattattaaacggattcaaaaccag
ttaaaaaggcaaggtgattattccaatgatgctgaactagaagctatgaagtcactaatg
gagagtccgctgtttaagaagatggcacaacttcaagcttcaatacaacaacttaaaaaa
gaggtaaaaaaagatgacttcgacatcaacaatgttgagttttcacacgaaaatggtggg
ttggtggttgatggtaaagaggtggaaaacgatagttcaatgtttaatggtagaaatgga
gatttggaagaatttattaaatctgctgcgcaaggaagggagacggaaatgattgaaata
tttaaatcggagaacgaaggacttgggtttagtgtggttgggttgaagtcagaacacagg
ggtgaccttggaatatttgtacaggacatcaggtctggtggagtggctgacagggatggt
aggttgaaggaaagtgatcaaatacttgtcataaacaaccaaccactcacgcaaaccata
tcgcatcagcaagcaattggaatcttgcagaaagtgaaagggaccgtcaaacttgtggta
gcacgaggggggattccccaatcacaaggccacttatcagcggaggggtcacaggtgtca
aggtcatcatctattctaagctctctatcccaagcctcaggcatgcctccggacacaaaa
tggaccgatgtggagacgattgatcttcgcaatgatggaagaggacttggattcgggatc
gttggaggaagatcaactggaggagtggtggtgaagactattgttcctggaggagcagct
catgaggatgggaggttgaagtccggggatcacattctcaggatcggggaggaggacctg
atgaacatggggtccgaggaggtggcacaggttctaaggcagtgtggagctcatgttaga
ctgattgtggctcgaggccctgttgatgatgatgatgatgtaaatgatgatcttcaggat
gataaacaagatgcaggagaaagaggatctgtatcttctgaggatgactcacattcttcc
tattcaagtagcagccaagaagaaaattccctcccagctgatgctcaaatatttgatgta
gaactagtgaaggatgccaagggtcttggaattactattgctggcttccttccagaagac
caaaatcgcaatggtacacctggtatatatgtaaagggggtatcatctggttctgcagct
gatattgatggtaggattcgtcctggggacaaactgatcgctgttgatggtaaaagattg
gatggagatgatgtatcaagcgatcaagctgtggaagttttacgatcaactggtgtggtt
gtacgactcactcttgcaaggactactaacagaaacgaaactcaaaataagtcacaacct
gtatcccgacaaattgtgaatgaaagacttcagcaagaaaaagagtttggtcaagagttg
agtcctgatgaagaagaaaggatcaaacagaagtggagggtggtgatgggacctcagtgt
gatattgtgattgctcaactaaagaaatacaattacctgagtggactcggtataagtttg
gagggcacagtggatgagaatgaaatgccacatcattatataaggtccattcttcctgaa
gggccagttgggcagagcaacaagcttgaagctggtgacgaacttcttgaagtaaacggc
aaccatttacttggtttaagccacgtagaagtggttgtcatcctcaaggagcttcctctt
acagtccgtatggtgtgtgcgagacctaaggagcattggacacgagatcctgcgagggat
tcagtcgttttcgaggagaaagatggagattttttggagatgaaaatgccgccaataaac
gacccgatgaatataattcctcctgctcatgaaaatgtagatgatgatacatcatctgac
tcatcattatcacaggattctatctcacaaatccagatgcacttgcctgagatgccacca
atgcagaaccaagtatatgaatcagagttaccgaccccagtcaaccagttccatccacaa
agtagtgttagtgacagcgatgaaacagatgtggaaacttccccaaaaaatgagcaagaa
cagttaaacagtgcttgggaagatgaagtcactgttattgaacttgagaagggtgatcgg
ggtctggggtttagtatcctggattttcaggacccgttacatgaagacaaaacagcagtc
cttgttcggtctttagtggatgggggtattgcggaacaagatggccgacttgaacctggt
gatcgacttatattcgttaacgataaatcgcttcagtttgccgaccttgaccaggctgtc
cgtgttttaaaggctgtaccacaaggtcgtgtattgattggagtaactaaaccacgtcca
atgttcagagttccaccaagttctgacagtgaagatgcagtagaagaagaggaagtaaga
acacccgttcttccacgacctccatcagtcagatcgtcttcctcttcatcatcttccaca
tcgcaggaaatgcagcattaccccatgccctctgactcccagtattctgcctcacccgtt
gaaatggaagtcaaactaccgggacctccaccccctccaccccatattgaacccaaccct
ccaaccccagaatacgaacccccaacaccccgctacgagcccccaacgcctcgttacgag
cccccagcacaccattttgagcctccgcagccccaaattgtttccgaacccctacaacaa
tcttacgaacccccaatccagcgttacgagcccccgcagccccaaacaccccctgaaagc
ccacctgctgccccccatgttatccgcactcagtcaggcaaatacacagttaaagattac
aacagacctgcgcgtttgtcttcatcagaaaccaaccctgtcaccactgccaatcaaaag
gttgaagtgaagcaagtccagatgtcaggcatgacagctatagcagtgacagcaaacaca
atacaacgcaaggaagaacctcaacaacctattatcaggcagcaagaggtgttctcatct
gctccagtggtccccccaaaaccagtgggttatactgccccctcatggcagacagctgaa
cctgagaaaccgaaaccaaaacctccgatcgacgggtttgaacgaattgttcaaatgtca
aaaggaaaatcaagtttaggtattactgtctcacctgacaaggaaggcgacggtttaatt
gttcgttccgttatcactggaggcgctgttgcacgggcaggggagccaaacataggggac
atgattcggcgtgttaataacgactcagctacgggattaggggccgctcaagcacgctcg
ctaatccggaaccattcagcttacagcgcagatgtcaagatcgcctacatccctaaaaaa
tacattgaggcattcaaacttggacttcctgttccggaggactcagatgttgatgaagat
cgtcggacaccgaaaactccatcaagagttgatcattttgcagcacttaaatctgtattt
gaaatgcaaaatggacagcaacctcaggacgcttcaaagttttatcttgattccagtttg
tggggttctacaaagagagttgacatacgtagagaagcaggtcaatcacttggcatcagt
attgttggcgggaaaaatatcaatgcaaactcacagcaacaaatatcactggataatggg
gaccttattgatggaatcttcatcaaagaaataatagaaggaagtccagtagatgtgaat
ggtgaaatgaaaccgggcgacaaaattttaaaagttgatggggttgatttgagtaacgca
acacacgagggagcagtggaggcaatattaaaagcgggcgtgcacgttgtctttcatgtt
caaacgtttgtcgggcatccaaaacagataatccttaacagcaaaagctgtactcacttt
actggtggaaaactcatggaacctcccccaccccagccagaagaagagtcagaaattgtg
aaagcagagcggaaatatggacatttacccggagaaattcacgtcgtggaaatggtgaaa
ggccctgctggtgttggattaagcttagctgggaataaagacaggtcccaacaacagata
tttgtggttggggttaaccccaatggagcagcgggtaaagatgggcgtgtcaaagtgggc
gaccaactactggagatcaaccacgttcctttgaaccaacgtaacaaccacgaacttgcg
tcgaatgtgatcaagaatgcaaaatcgaaacttctatttgtgatcaatagacagcagaag
gaagcacgagctgataaacctctaaagaaaactccttcagtagaatcctcatcccatagg
aggcagagctctgatgtccccgctgagaaatctcctcctcctcccaaacgctccagctct
ggaggacgacatagcccattttctgacgtcagagttatcaagctcgtaaaggatttccaa
ggattaggctttgcgatctctgaaacccctactggtatagtggttcaatccattgcacca
ggtggtacagcagatagagatggtagattggtaagaggagatcatatacttgctgtggat
gatcagtctgttagtggagtctcttatgaaacggcgatctccatattaaagcagtcaagg
ggaacagttaaacttactgtggcatctggtccagtcaagtcttctgcttcatcagatgcc
tcttctgttacatcctccggacacagattatccacgatgtccccgaccctggatagcggg
agtgagaactctgacccacttacgtgcccgattattccaggcagggaaacaaccatagaa
atcaacaaagggaaggctggacttggagtgagcattgtgggaggatctgacagtttgttg
gatgcagtgttggtgcacacagtgtatgaacaaggagctgctgcaaaagacggaaggtta
tggccaggtgacaggatcttaacagtgaacaatcacagtttgcgtcatgccacacatgac
gaggcaatcgaagtattgcgcaacaccccggggaaggtccaccttactatcctacgtgat
gaaaacagggagacaattaacaatgaatcagagtccgatatatatgatatctatgatgta
aatttaatgaagaaaagtgggcgaggtctcggacttagcattgttggaagaaaaaacgca
gctggtgtgtttgtgagtgaccttgtacagggtggtgcagcagcaagagatggaacaatg
aaacctggagatcaaatactaagtgttaatggcgtcaatataaggatggctggacaagaa
gtagctgcacaattgctgaagaatgctcagggcaaagtcgatctcaggatcggaagatta
aagtccggagctccttctgatctcataaagatgccaaagctaagtctcagttccaatgca
tctgaagatgctcctaagagtcccactgatgatttgggaggagacatccgattcgtggag
atcgataagacccccacccaaccacttggcatcagtatagcaggtggagttggttctcct
ttaggggatgttcccatttttgtagcagttgttcaaaaccatggggcagcggcaggaaag
ttgaaggttggggacagaatacgaagcattaatggacagactacagataacaagtcacat
gatgaagtggtagcaatgctgaagggtcaggatgacgctattgttctaatgcaggtgcaa
gaaggtggggaaagtataaaacaactaagtgaatatcttgtacaatctgccaaacctaat
ttaccaatcagtggacaacaaggaagccaagaaaagaaggaaatagacatcgagttgaac
cgggggtctgatggacttggttttagtatcgttggagggcatggatcaccacatggggat
cttcctatttatgtgaagtctgtgttctcagttggagcagcagcagtggatgggaggtta
cgtaggggggatcggattgtatccgtgaacggcgagaaattggacggttatacgcatgag
gaagcggccgaggctctcaaacgaagagcaacccgtatcatacttcgtgtagttccgtcc
acataa
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