Ciona intestinalis (yellow sea squirt): 100186704
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Entry
100186704 CDS
T01056
Name
(RefSeq) transcription factor SPT20 homolog
KO
K21245
transcription factor SPT20 homolog
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100186704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cin03036
]
100186704
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
100186704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt20_SEP
Motif
Other DBs
NCBI-GeneID:
100186704
NCBI-ProteinID:
XP_002122263
LinkDB
All DBs
Position
2:complement(4106783..4123296)
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AA seq
926 aa
AA seq
DB search
MLADHTQHAQYIIQRAEQCEVRKKSLPSSSKWRSIHSQLHDVFVEEEEDDDGEEPITKRA
CFSHNTLETLCTKDKSLNRLIVNLFPLDGGYSVMLRGGNGQYVETIQLPYTEYDVLDYID
NEEIPPLLMKTFENLEKNIFYSGCVITEIRDYRIAAGPHAFQTKFVLLRPTQQTLLSDAN
NIVNETSKSFRWTAEDRLSLESYLTLGTTEPLCLDPSPSVGIVKNILQARNKFFKTRPFQ
QCVRRNGLLGLKRRKVQSTRPAPESLKLFDFMKKLRSSRKSPPATDIRLPKNIVDTWRKV
PFDLDPPNSEIEVGNYAKALTPRPPSITDSDLLEVQQVHLKSEGANRDVYSLIKILQRPS
DMHYFGKLQSNKYIQGETGRDISNSCRFSLGTEHRANLYILQYQELFAEDGRRPATVTVS
RPLQQNTAKYQIPLQQQPWQLEQDKSLYSVGSINNIPAKHWHKLKVNDNIAKPAPIQPLP
INPQRITTFPAQAPPTASTNQQPVITTPTLNTITLQPSSQSSFMFPLPRQVTHQQTPTIS
APSPVPLQSPIPGTRVVGQRLSSLNGETFNLLTGADGGVYQIKEAGPSSGKRSRQNSQDV
FNFTTQSGFTTGQQQLTFNNNQRSGTPLITPTPQESSSPAPNNNLIQNFDQLMSMQNTLN
QGGSVSVQLPLSMALNTQQQQVVGQVRLQKPPQQQQNTIIRMPVSIASGPPTTTTHQVAI
NILGGGRNVISQQPPTILGNIQLSGSRLPGGTLTIPASQLPPALAAQIAAQLNQDKPQTS
KMTEQHFTVATSDVSSTPITILTNNNNNVQGQIGQVRAVTSNRIQQQMTQQSDNKGGTIT
FNVRGTNAQQPVQLLQVSGANTIQQLPIRAGQQLVLNTVRSSPIEQSSSPQMALAQHLQQ
LASGNGGNSNPKPVRSRKRKSTPDQK
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atgttagcggatcacacacagcatgctcagtacatcatccagcgtgcggaacaatgtgaa
gtaagaaagaagtcgctcccatcctcatctaagtggagatcgatccacagccaacttcac
gatgtctttgtggaagaagaggaagatgatgatggtgaggaaccgataaccaagagagct
tgtttctcacataacacacttgaaactctgtgcacaaaagataaaagtttgaatcgatta
attgtgaacctatttcctcttgatggtggttattctgttatgctacgtggtggtaacgga
caatatgtggagactattcaacttccatacactgagtatgatgtgcttgactacattgat
aatgaagagatacccccactactcatgaaaactttcgaaaatttggaaaagaatattttc
tattctggttgtgtaataacggagattcgagattatagaattgctgccggacctcatgct
tttcaaacaaagtttgtccttctgcggcccacccagcagacactgctgagtgatgccaat
aacattgtgaatgaaacttcaaaatctttccgatggacagcagaagatagattatctttg
gagagctatctgacattaggaacaactgaaccactctgtcttgatccttctccctctgtt
ggtattgttaaaaacattctgcaagctcgaaataaattcttcaaaacaagaccttttcaa
cagtgtgtacgacgcaatggtttgttaggtttaaaaagaagaaaggtgcagagtacaaga
ccagcacctgagtcactgaaactttttgatttcatgaaaaaacttcgatcttcaagaaaa
agtcctcctgctactgatataaggctgcctaagaacattgtagatacctggaggaaagtt
ccatttgaccttgatccaccaaacagtgagatagaagttggaaattatgcaaaagctctc
actccccgtccaccttctatcacagactctgacttgcttgaggtgcagcaagtccatttg
aaatctgaaggtgcaaatcgtgatgtttattcacttattaaaatattacaacgtccttct
gatatgcattactttggcaagttgcagtccaataaatatatacaaggggaaactggaagg
gacatttctaacagttgcagattctcgcttggcaccgaacacagggcaaacttatacatt
ctccaataccaggaattatttgctgaggatggtagaagacctgctactgttactgtgagt
cgcccactgcagcaaaacacagccaagtaccagatcccattacagcaacaaccctggcag
cttgagcaagataaatcattgtactcagttggttccattaacaatatacctgcaaaacat
tggcacaaactgaaagtgaatgacaacattgcgaagccagcacctatccaacctctacct
attaatcctcaacgaatcacaaccttccctgcacaagccccacccactgcttcaaccaat
cagcagccagtaatcaccacgcccactttgaacaccattaccctacagccttcttcacag
agttcctttatgttcccgttgccccggcaagtaacccaccaacaaaccccaacaatatcg
gccccatcccccgtacccctgcaaagccccatacccggtacccgagtagtgggtcaacgc
ctcagctcgctgaacggcgaaactttcaacctgctaactggcgctgacggtggtgtgtat
cagatcaaggaagcaggtccttccagtggaaaacgaagtcggcaaaattctcaagatgtt
ttcaatttcaccacacagtccggatttactacaggccaacagcaacttacattcaacaac
aaccaacgatcggggactcccctgatcacccccacaccccaggaatcatcaagtcccgcc
cccaacaataatttgatccaaaactttgatcaacttatgagcatgcagaacactttaaac
caaggtggatctgtcagtgtacaacttccattgagcatggcacttaacacacagcaacaa
caagtagtagggcaggtaaggttacagaaaccacctcagcagcagcaaaacacaatcata
agaatgccggtgtcaatcgcaagtggtccacccactactacaacacatcaagttgctatc
aatatattaggcggaggaagaaacgtgatctcccaacaacctcccaccatactaggcaac
atccagttatcgggatccagattacccggtggtacgctcactatacctgcttcacaacta
ccacctgcgctagctgcacaaatagctgctcagttaaaccaagataaaccacaaacatcc
aagatgacggaacaacatttcaccgtggctaccagtgatgtttcatccactcctataacc
atactcaccaacaataacaacaatgtgcaaggtcaaataggtcaagttcgggctgtcacc
agcaatcgcatccaacagcaaatgactcaacaatcagacaacaaaggaggaactatcacg
tttaatgtgcgaggaacgaacgctcaacaacccgtgcaacttttgcaagtgtcaggcgcg
aacacaatacagcagcttccaatacgagctgggcaacaactggttctgaacacggttcgt
tcgtcgcccattgaacagtcgtcatcaccacagatggctttggcgcagcaccttcaacaa
ttagcgtctggaaacggaggcaactccaaccccaagccagtgcgaagtcgtaagcgaaaa
tcgacgcccgatcaaaagtag
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