Ciona intestinalis (yellow sea squirt): 100186775 Help Entry 100186775         CDS       T01056                                  Name (RefSeq) collagen alpha-5(IV) chain   KO K06237   collagen type IV alpha Organism cin  Ciona intestinalis (yellow sea squirt) Pathway cin04512   ECM-receptor interaction cin04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:cin00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     100186775  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     100186775  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:cin04147]     100186775    00536 Glycosaminoglycan binding proteins [BR:cin00536]     100186775 Exosome [BR:cin04147]  Exosomal proteins   Exosomal proteins of other cancer cells    100186775 Glycosaminoglycan binding proteins [BR:cin00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    100186775 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen C4 Motif Other DBs NCBI-GeneID:  100186775 NCBI-ProteinID:  XP_026689723 LinkDB All DBs Position 1:complement(5607650..5618672) Genome browser AA seq 1736 aa AA seqDB search MAQFVHLPNRYTWLLFVLFVSLSLEINAERSIKKLKGPCGGRDCSKLGKCGFCVSEKGRR GPPGAQGPTGLQGEIGFPGPEGVMGPKGYGGLPGRPGKAGEKGDRGTIGVPGYSGINGVP GHPGESGPRGYPGKDGCNGTMGDMGPAGPPGYNGLDGLPGPDGMKGAKGEPAYVNVEDLT KGARGERGHTGPKGPSGRPGTTGPLGPKGYPGKPGPPGRPGSKGRTGPQGHKGIGYQGES GEKGEPGPPGLPGSPGFLTGPPDSLFTPIPGPPGNNGSKGMKGNVGMQGEPGYPGFEGER GRFGEKGEKGVRGLAGGRGPTGAAGVPGYDGRQGERGMPGRSGIDGAPGMKGEQGEQGPV GAAGLPGLQGLQGPIGSPGSPGNVGKPGTAGPHGQPGINGFDGPPGEDGLPGQIGLPGNP GVPGVGEKGEPGQKGRNGKHGQDGVPGLPGEEGPRGFPGISGESIPGLNGRDGPPGLRGE PGQPGARGVAGAPGQIITPDGDHMVGPQGPTGIPGVRGLKGLKGVAGRDGGPGEKGEKGG ECACQDAVGEKGSPGPPGQNGLPGLSGLPGISGQLGEPGEPGESGENGPRGFDGQKGRTG EIGPPGQKGEPATLVGDVKGEPGEPGLPGGQGEPGIAGIPGQDGRSGRRGAHGEKGEVGP QGLPGLPGLKGFQGLKGREGRAGQDAFGLPGQIGFKGEKGDEGFTGPQGFPGSKGEPGES LGGVAPKGEKGETGSPGRVGFPGLKGTKGEQGKTGVEGVTGDDGERGDTGEPGLPGVPGE QGLRGPQGESGLPGVPGLSGERGVTGIRGGNGMKGEKGKDGVSYPGPAGPAGQKGEVGEP GAKGESGSQGFPGLVGLPGPPGLPGLEGTPGLEGLPGKDGSPGEKGESALVGRRGPPGPE GPSGVTGPPGKPGIKGNRGPPGLPSSGKLRGPKGSIGFAGRDGETGLKGDKGSTGLPGET GKPGPAGADGLPGTPGPPGPRGANGRTGPKGSDGIDGLPGLDGMSGLYGKKGAPGKQGAT GPQGFKGEKGSLPPGGLVDVRGQTGEKGDTGPVGEPGQQGLPGPDGPKGNRGNQGIKGST GVSGIPGEYGRNGLPGVEGEKGAKGARGRIGLPGVVGRPGPIGETGRTGLPGPSGFKGQK GMLGEAGQPGLPGREGSPGLHGENGPKGMQGRRGLPGLSGLDGPSGQKGERGAIGQSGPK GYPGLVGMKGEDGAPGFDGLDGRPGRRGEKGKPGVSNVAGPPGATGITGVKGETGLSGLP GESGPIGLKGKRGNPGPAGFSGRPGPVGEQGLPGFPGPKGEPGLPGGVGIPGRQGLPGKD GQEGFTGHQGLPGIKGMPGLPGQNGLDGVPGIQGDTGPAGLVGLTGPSGQKGSVGLPGSH GFSGDKGVRGFPGNPGRPGFPGLVGEPGFKGEPGRSIEPTDLVAGPKGNTGKPGLPGSPG LIGRTGLPGLQGFKGDQGERGLDGRDGIPGSHGQRGNPGPRGFIGPKGSPGRDGTPGRSG VAGPAGRVRPPGHLIVRHSQTVYIPECPAGMTKLWEGYSLLYLEGSEKAHGQDLGQAGSC MPRFNTMPFMYCNTQSVCKYGSRNDKSYWLSTTAAIPMMPVSVDMVPEYISRCSVCESSS IAMAVHSQDMVIPPCPDGWKGIWLGYSFAMHTAAGAEGGGQSLSSPGSCLQDFRATPFIE CNGARGHCFFYNNQYSFWLTTISEENQFGTPEMETLKAGNLRTRVSRCQVCTRLNQ NT seq 5211 nt NT seq  +upstreamnt  +downstreamnt atggcgcaatttgttcatttaccgaatagatacacatggctgctgttcgtgttgttcgtt tcactgagtctggaaatcaacgcagagcgatctatcaagaagctgaaaggtccttgtggt ggtcgcgattgttcaaagttggggaaatgcggattctgcgtttcagagaaaggccgccgg ggaccccctggtgctcaaggaccgaccggtctgcaaggagagattggtttcccgggtcct gaaggagtcatgggcccgaaaggatatggtggtcttcctggcagacctgggaaagctgga gagaaaggagacagggggactattggcgtgcctggatattcagggatcaacggagttcct ggacaccctggagagtctggtcccagaggataccccggtaaagatgggtgcaatggaacc atgggtgacatgggacctgcaggacctcctggatacaatggcttagatggattaccgggt cctgatggaatgaaaggtgcaaagggagaacctgcttatgtgaatgttgaggaccttact aaaggtgcaagaggtgaacgtggccacactggaccaaaaggaccttctggaagacctggt accactggtcccttgggtcccaaaggttaccctggcaaaccaggtccacctggaaggcca ggaagtaaaggtcgaacaggtcctcaaggccataaaggaattggttaccagggagagagt ggtgaaaagggtgaacctggccctccaggattacctggtagccctggatttttgactggc cctcctgacagtttgtttacaccaattcctggaccaccaggaaataatgggtcaaaggga atgaagggtaatgtcggcatgcaaggagaacctggttacccaggatttgaaggagaaaga ggaagatttggtgaaaagggagagaagggcgttcgtggattggctggaggacgaggaccc actggtgcagccggagtaccgggttatgatggcagacagggagaacgtgggatgcctgga agaagtggaattgatggagctcccggtatgaaaggggagcaaggagagcaaggtccagta ggagcagcaggtcttcctggattacagggcctacaaggacctattggttctcccgggtca ccaggaaatgttggtaaaccaggtacagcaggaccacatggtcagccaggaataaatggt tttgatggaccacctggtgaagatggtctacctggtcagataggtctgcctggtaaccct ggtgtgcctggtgttggtgaaaaaggagaaccaggacagaaaggtcgtaatggtaaacat ggtcaggatggtgtcccaggtttacctggtgaagaagggccaagaggatttccaggaatt tctggtgaatccattcctggactgaatggaagagatggcccgcccggattacggggtgaa cctggacagcctggtgcgagaggtgtagctggtgcacctggtcaaattatcacaccagat ggagatcatatggttggtccacaaggtccaacaggaatacccggtgtacgtggtttaaag ggtctcaaaggtgttgctggtagggatggtggccctggagaaaaaggagagaaagggggt gaatgtgcgtgtcaagatgcagtaggggaaaaaggaagtcctggacctcctggccaaaat ggtctgcctggactatcagggttacctggcatcagtggccagctgggtgagcctggtgaa ccaggagaatctggtgaaaacggaccaagaggatttgatggccaaaaaggaagaactggt gagataggtccaccaggtcaaaaaggtgaaccagcaactttggtcggagatgttaaagga gaaccaggtgaaccaggtttgcctggtggtcaaggtgaaccagggattgctggaattcct ggtcaagatggcagatctggtagaagaggagcacatggagaaaagggtgaagttggaccg caaggtttgccaggtctaccgggtttaaaaggtttccaaggacttaaaggtagagaaggg agagctggacaagatgcgtttggtttgcctggtcaaattggcttcaaaggagaaaaagga gatgaaggattcacaggaccacagggttttcctggatcaaaaggagaacctggtgagtca ctaggaggagttgctcctaaaggagaaaaaggagagacaggatcaccgggtagagttgga tttcctgggctgaaaggtacaaaaggagaacaaggaaaaactggggttgaaggtgtcacc ggggatgatggagagagaggtgacactggtgaacctggattacctggagtgccaggagaa caaggtctaagaggaccacaaggcgaatctggcttgccaggggtacctggtttatctggt gaacgtggtgtcactggtatacgaggaggcaatggtatgaagggtgaaaaaggtaaagat ggtgtttcataccctggtcctgctggccctgctggccagaaaggtgaagtaggagaaccg ggagctaagggagagtctggaagccaaggattcccaggattagttggcctgcctggtcct cctggattacctggtttagagggaactccaggtttagagggtttgcctggaaaagatggt tcaccaggtgaaaagggtgaatcagcacttgttggaaggagaggtccacctggaccagaa ggaccaagtggtgttactggtccaccaggtaaacctgggattaaaggtaatagaggacca ccaggtttaccatcaagtggtaaactaaggggaccaaagggatcaattggatttgctgga agagatggtgaaactggtcttaaaggtgacaaggggtcaactggtttgcctggtgaaact ggtaaacccggtcctgctggagcagatggtcttcctggaactcccggtccacctggacct cgaggtgccaatggtagaactggaccaaagggaagcgatggcatagatggcttacctggt cttgatggtatgtcaggactttatggcaaaaagggagctccaggtaaacagggagcgact ggtcctcaaggatttaaaggtgaaaaaggttcactacctccgggtggtttggtcgatgtc agaggacaaactggtgagaagggtgacactgggccagtaggagaacctggacagcaaggt cttcctggacctgatggacccaaaggaaacaggggaaaccaaggtattaagggttccact ggtgtttctggaataccaggagaatacgggcggaatggtttacctggagtggaaggagaa aaaggggcaaaaggagcaagaggacgtattggactaccgggtgttgttggtagacctggt cccattggcgaaactggcagaactggtttgccaggaccttcgggttttaagggacagaaa ggtatgttgggtgaagcaggtcaacctggcctacctggtagggagggaagtcctgggtta catggagaaaatggacccaagggaatgcaaggcagaagaggtttgcctggactaagtgga ttagatggaccatctggtcaaaagggtgaaagaggtgccattggacaatcaggaccaaaa ggttacccagggttggtgggaatgaaaggggaggatggagcacctggatttgatggtttg gatggtcgacctggaaggagaggagaaaagggaaaaccaggtgtatctaatgttgcgggt ccaccaggtgcaactggaattacaggtgttaaaggagaaactggtttatccggtttacct ggtgaatcaggtcccattgggcttaaggggaagagaggcaacccaggaccagcgggattt tctggaagacctggtccagttggtgaacaaggtttgccaggttttcctggaccaaaagga gaaccaggtctacctggaggagttggtatccctggcagacaaggtttacctggaaaggat ggacaagaagggtttactgggcatcaaggtttgcctggaattaagggaatgcctgggttg ccaggccaaaatggtcttgatggtgttcctggtattcaaggagatacaggaccagcaggt ttagttggtcttactggaccttcaggccaaaaaggaagtgttggattaccaggatctcat gggttttctggtgacaaaggtgtaagaggatttccaggaaacccaggacggccaggtttt ccaggtcttgtaggagaacctgggttcaaaggtgaaccaggtaggtctattgaaccaaca gatcttgttgctggaccaaaaggaaacactggaaaacctggtttacctggatcacctggt ttgattggcagaactggtcttccaggactacaaggttttaagggtgatcaaggtgaacgt ggtttggatggacgtgatggaataccaggttcacatggacagagaggaaatccaggccct cgtggctttattggacctaaaggaagcccaggacgagatggaactcctggtcgatctggt gtagctggtcccgctggacgtgttcgtcctccaggccatcttattgttcgtcacagtcaa actgtttatataccggagtgtccagctggaatgactaaactttgggaaggttacagtttg ctttaccttgaagggagtgaaaaggctcacggtcaagatttgggtcaagcggggtcttgc atgccacgattcaacacgatgccattcatgtactgtaacacacaaagtgtgtgcaagtat ggaagtaggaatgataagtcatattggttatccaccacagctgctattcctatgatgccc gtttctgttgatatggttcctgaatacatcagtagatgctcagtatgtgaatcatcttca attgctatggcagtccacagtcaagatatggtaattccaccttgcccagatggatggaaa ggaatctggcttggctacagttttgctatgcatacagcggctggtgctgaaggtggaggt cagtctctatccagcccaggttcttgcttacaagacttccgtgcaacacctttcatagag tgtaacggtgcaagaggtcactgcttcttttacaacaaccagtacagtttctggcttacg acaatttctgaggaaaatcaatttggaacacctgaaatggaaacgctgaaagctggaaac ttacgaacaagggttagtcgatgccaagtgtgcacacggttgaatcagtaa

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