Ciona intestinalis (yellow sea squirt): 100186812
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Entry
100186812 CDS
T01056
Name
(RefSeq) transcription initiation factor TFIID subunit 2-like
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100186812
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
cin01002
]
100186812
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cin03021
]
100186812
03036 Chromosome and associated proteins [BR:
cin03036
]
100186812
Peptidases and inhibitors [BR:
cin01002
]
Metallo peptidases
Family M1
100186812
Transcription machinery [BR:
cin03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
100186812
Coactivators
SAGA/TFTC/STAGA complex
100186812
Chromosome and associated proteins [BR:
cin03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
100186812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
Motif
Other DBs
NCBI-GeneID:
100186812
NCBI-ProteinID:
XP_002126792
LinkDB
All DBs
Position
4:complement(1299708..1303590)
Genome browser
AA seq
1154 aa
AA seq
DB search
MDRKDKKSSSFQRPYKLSHQLLCITSINFQRRALMGYVELMLQPKKSDIRVIKVNSKQSR
IHRVCVNNHEATFQYQDPSLDLAQRDPKSRNIDVLSTCHLTAVESVDPDTGYHGEITIRV
PQEVSKTIKEQKPLCVSMDFTLENPKGGIHFVVPDAEGSLKERAAHLFTFGLENCARLWF
PCVDTYSEPCTWKLEFTVEDSMTAVSCGDLVETVYTPDRKRKTFHYVLSIPTAAPNICLA
VGPFEILVDPNMHEVTHFCLPQLMPLLEHTTETCHKVFEFFEEVLSFRFPYSCYKQVFVD
EAYQDTLPYASVSVFSVNLLFSKIVLDQTPITRKHMARALSEQFFGCFMARESWNDYWVP
AGIAGYLYGLWLRSTFGNSEYRDWIASETQQLCQYETTVGPVVLHNTGKDSFLGRHFPHQ
HPHTVSPAYYKMMRCKSHLVMRQIENRIGPQLLLQAFNKLLSLANTSAQQKVISSTWSTM
LLSTAGFLKSTYSVSGKDISNLIDQWVHKGGIVRFNSKFVFNRKRNTVELDIKPDIINKG
TQKYVGPLTVRVQELDGSFNHTIQIEENTTKHDLPCHSKSRRNKRKKIPLLNGEEVDMDL
SFMDPDSPVLWIRIDPDVNIPRLVNFEQPDYMWQYQLRYERDVIGQSEAIGALEAFSTPA
TRNALTDIIENEHYYYKVRMQACKSLANTANAMVNTWTGPPAMLNLFTRFFCCDTSPPIV
RMNNFSNFQQYFLQKQLPVAMSMLRNTHGVCPKEILHYLFGLIKFNDNSKNKYSDNYYRS
ALVDALNNTITPAVTLQSDQKVTADSMPMDIHTIVDEVTRFLNLEKHLPSYRYTITISCL
RAIRNLQRNGHLPSDIELFKSYAAPGFFRDVRLAAVGCLVDVIKANKNVDELHWLLDLAR
EDRVAEIKYGIIRALVRNPPFQKGDKSLLNNAEIVEKLWSYINHETFYDPRLRCEAIDLY
FKLFGKGRPQCLPAPQFGVVVNLKEKRTQINPNTAHDKRGYEGHDYPRLKRPTSMPMSSY
GEDQSNKLTMKIKLGGPSRSSSLLDTDDVLAAQSLLSLSHGDIPSRPSTPGGGNEPSSWQ
MSPKFSGGDFSLSSTPNMMHGHSSMPQLLSKDKKKKKKHKHKHRHKRGDSDWSSPATPSS
SVHSPFAAVNSPLE
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaaaagataaaaagtcgagcagttttcagagaccatacaaactgagtcaccaa
ctgttatgcatcacttccataaattttcaacgtcgtgcccttatgggctacgtcgaattg
atgctacaacccaagaaatcggacatcagagttattaaagttaacagcaaacaatcccgg
atacatcgtgtgtgtgtcaacaaccatgaagctacatttcaataccaagatccatctctg
gatttagctcaacgagacccaaagtcgcgaaacattgatgttttaagtacctgtcatctc
acagctgtggaaagtgtggatccagatactggttatcatggagaaataacaattcgcgtg
ccacaagaggtctctaaaacaataaaagagcagaaacccctatgtgtgagcatggatttt
actctggaaaacccaaaggggggaatacattttgttgtacctgacgcagaaggatcatta
aaagaaagagctgcccatctttttacatttggcttggaaaactgtgctcgcctttggttt
ccatgtgtggatacatacagtgaaccctgtacatggaaactcgagtttactgttgaagat
tctatgacagcagtctcatgtggagatttagtggaaacagtgtacacccctgatcgtaaa
agaaaaacatttcattatgtgttgagtattcctactgctgctcctaacatttgtctggca
gtagggccttttgaaatattagttgatcctaatatgcacgaggtcacacatttttgcctt
ccacagttaatgcctttacttgagcacacaactgaaacctgtcataaggtgtttgaattt
tttgaggaagttttaagcttcagattcccttattcctgctataaacaagtatttgtggat
gaagcataccaggatacactaccatatgcttctgttagcgtgttcagtgttaatttgctg
tttagtaaaatagtcttggatcaaacaccaattacacgcaagcacatggcacgagcatta
tcagagcaattctttggttgctttatggctcgtgagtcttggaatgattactgggtacct
gctggcatagctggctacttgtatgggctatggttgagaagcacatttggaaacagtgaa
tacagagactggatcgcaagtgaaactcagcagttgtgtcaatacgagactacagttggt
cctgtggttttacacaacacaggcaaggattcgtttttaggtcgccattttccccatcaa
caccctcatactgtgtcacctgcttattacaaaatgatgaggtgtaaatcacacttggtt
atgagacaaatcgaaaatcgtattgggccccaattgctacttcaagcttttaacaagctt
ctgtctttggccaacacctcagctcagcagaaagtaataagctcaacatggtctacaatg
ctgctttcaactgctgggtttcttaaatccacttactcagtatcaggtaaagatatctca
aacctaatagaccaatgggtgcacaaaggtggtattgttaggttcaacagcaagtttgtt
ttcaacagaaaacgaaacacagttgagctggatatcaagcctgacattataaacaaagga
acacagaaatatgtcggcccattaacagttcgtgtgcaggaactagatggttccttcaac
cacacaatacaaattgaagaaaatactacaaaacatgacttaccttgtcactccaaaagt
cggcgtaataaacgtaagaaaattcctttattgaacggggaagaggtggatatggatttg
tcctttatggatccagactcaccagtgttgtggatcaggattgacccagatgttaacata
ccacggctggtgaattttgagcagccagactacatgtggcagtaccaacttagatatgaa
agggatgtaattggtcaaagtgaagccatcggtgcattggaagcattctcaactccagca
acaagaaatgcattgacagatatcattgagaatgaacattactactacaaagtacgcatg
caggcgtgcaaaagcttggcaaacacagctaatgcaatggtcaacacatggaccggccct
cctgccatgttaaatctattcacacgttttttctgctgcgatacttctccccccattgtt
cgaatgaataacttctctaactttcagcaatacttcctacagaagcagctacctgtggca
atgtcaatgctccgtaacacacatggtgtttgcccaaaagaaatcctgcactacttgttt
ggtttgattaagtttaacgataactcaaaaaataaatattcagataattattatagatct
gcactcgtagatgctcttaacaacaccatcactcctgcagtgacattgcagtcagaccag
aaagtaactgcagattccatgcctatggatatccacactatagtggatgaagtgacacga
ttcctaaatcttgaaaagcacttgccttcttatagatacactatcactattagctgtcta
agagccatcagaaatttgcagaggaatggtcacctaccttctgacattgagctttttaaa
agttatgctgcacctggatttttcagggatgtcagacttgcagctgtagggtgcttagtg
gatgtaatcaaagccaataaaaatgtggatgagctgcactggttgctggatttagcaagg
gaagatagagttgcagaaattaaatacggaatcattcgtgctctggtgagaaatccacca
tttcagaagggtgataagtcgctacttaacaacgcagagattgtggagaaattgtggtct
tatataaaccatgaaactttttacgacccacgccttagatgcgaggccattgatttgtat
tttaaacttttcggtaaaggtcgtccgcaatgtttacccgctccacagtttggagtcgtg
gtcaatttaaaggaaaagcgaactcagattaatcccaacactgcccatgataaacgagga
tatgaaggtcatgattatcccaggttaaagcgacctacatcaatgcccatgtcttcatac
ggggaagatcagtcaaataaactgaccatgaaaattaaacttggtggtccgtcacgcagc
agcagtttgcttgacactgatgatgttcttgcagcacagagtctgttgtcgttatcccac
ggtgacattccctcaaggccttcaacaccgggtggaggtaatgagccatcctcgtggcag
atgtcgccgaagttttctggcggagacttttctctctcgtcaacaccaaacatgatgcat
ggccactcctccatgccacaacttctgtctaaagataagaagaaaaagaagaaacacaag
cataaacatagacataagcgtggagacagtgactggtcatcacctgccacaccttccagt
tcagttcactcaccatttgctgcagtgaattctccactggaatag
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