Ciona intestinalis (yellow sea squirt): 100187076
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Entry
100187076 CDS
T01056
Name
(RefSeq) ATP-dependent DNA helicase Q1-like isoform X1
KO
K10899
ATP-dependent DNA helicase Q1 [EC:
5.6.2.4
]
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cin03400
]
100187076
Enzymes [BR:
cin01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
100187076
DNA repair and recombination proteins [BR:
cin03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
100187076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
RQC
GAS
Fer4_9
Fer4_8
DUF362
DUF724
Fer4_17
APG6_N
Motif
Other DBs
NCBI-GeneID:
100187076
NCBI-ProteinID:
XP_026690193
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All DBs
Position
1:5069246..5076498
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AA seq
697 aa
AA seq
DB search
MWKFVAALSKGRVGSFTKVLQPQNKERLHFEPRSLSNLQLGVRSTNDYQTTSSNQGDWGK
SFLEGLKLKKNVQQVEDGVVDLQMELRKVKYAIENKNQQVLSIQSEQEMLHKKMTDIVQE
IKDNSSPHSNTKHVPQLHNTDVDWSSKNFPWSAELDKTLQDVFQIKHFHPVQLQAINSTM
SKCDVLLIMSTGGGKSLCFQLPAIISKGITLVVTPLVSLMEDQVLNLKQYGIKAHMLKAD
SSMDDVMEVYDSMKSPNPQVKLVYVTPEKISKSKQFMSHLDKCYKSGNLSRIAIDEVHCV
SQWGNDFRPDYKMLGILKRLYPSTPIIGLTATSTNKVTFDTKQLLNIPDCLVFRTPLVRK
NLFYEVRPKPTTHQKVVQDIVTTIQENFKGESGIIYCISCRNCTDVCNSLIKSGIRAAVY
HARCSAKKKSEVHQQWLNNEIQVICATVAFGMGINKPQVRFVIHHSISKSVENYFQEAGR
AGRDGKPSLCLLYFGFWDVFRQTSMVFRERTGTENLSKVVKFCHNLKTCRVELLANHFGE
VNEQCQSPGMCDVCSNLQKTTKKDVTEPCKVLLRLIKSNSMDGNRLTGIQLVDAAIRDSK
NRKTKWKDLSRHEWQRIVFDMLVNGFLREDYHLTSRSTIVYLTYGRNVRFLLNNKVMLDL
HDNIQQPKNIYKDCLSLNHGTLEKIPKLDNLGKSDNT
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgtggaagtttgttgctgctttatcgaaagggagggtcgggtcatttacgaaagtgtta
caaccacaaaataaagaaagacttcacttcgaacccaggagtttgtccaacttgcaactc
ggtgttcggtcgaccaatgattatcaaacaacttccagcaatcaaggtgattgggggaaa
agttttctggaagggttgaagttgaaaaaaaatgttcaacaagtagaagatggtgttgtt
gatctccagatggagctacgaaaagtaaaatacgcaattgaaaacaaaaatcaacaagtt
ctctccatacaatctgaacaagaaatgcttcataaaaagatgacagatattgtacaggag
atcaaagataactcatcacctcattcaaatacaaaacatgttccacagctgcacaatacc
gatgtggattggtcttcaaaaaattttccatggagtgcagagctcgataaaactctacag
gatgtgtttcaaattaaacatttccaccctgtgcagttgcaagcaatcaactccactatg
agtaaatgtgatgtgttgctcataatgtcaactggtggtgggaaaagtttatgctttcaa
ttaccagcaattatttccaaaggaataacactggtagttacaccattggtatctttaatg
gaggatcaagttttaaacttgaagcaatatggaataaaagctcacatgctaaaggctgat
tcctccatggacgatgtaatggaagtttacgattcaatgaaatctccaaatcctcaagtg
aaacttgtttacgtgacaccagagaaaatatcaaaaagcaaacaattcatgtcccatttg
gataaatgttacaagtctggtaacttgtcacgtatcgcgatagatgaagtacattgtgtg
agtcagtggggaaacgactttagaccagattacaaaatgttaggaattttaaagcgactt
tatccttccacacctattattggtctcacagcaacttccaccaacaaggttacatttgat
acaaagcaacttcttaatattcctgattgcctggtgtttcgaaccccacttgttcgaaag
aatttattttacgaagttcgacccaagccaactactcatcagaaagttgtccaagatatt
gtcacaactattcaagaaaactttaagggggaatctggcatcatctactgtatatcatgt
cggaattgcacagatgtttgcaacagtttgatcaaaagtggaatcagagctgcagtatat
cacgctcgatgttcggcaaaaaagaagtccgaagttcaccaacaatggctcaacaatgaa
attcaggtgatttgtgcaactgtagctttcggaatgggaatcaacaaaccacaagttcgc
ttcgtaattcaccattcaatcagtaaaagtgtggaaaactacttccaggaagctggcagg
gcaggaagggatggaaaaccatctttgtgtcttctttacttcggcttctgggatgttttt
cgacaaacatcgatggttttcagagaacgaacaggaacggagaatttatcaaaagtcgtc
aagttttgtcataatttaaaaacctgtagagttgaattactcgcaaatcatttcggggag
gtaaacgaacaatgtcaatcacctggtatgtgtgatgtctgttcaaacttacaaaaaacc
acgaagaaagatgtaacagaaccatgcaaagtgttgctgaggttgattaaatctaattca
atggatggtaatcggctgacaggcattcaacttgttgatgccgccatacgtgatagcaag
aatagaaaaacaaaatggaaagatctcagcaggcatgagtggcagagaattgtatttgac
atgctggttaatgggtttctcagagaggattaccatctcacatcaagatcaaccatagtt
taccttacatatggaaggaacgttcgctttttattgaataataaagtcatgttggatctc
catgacaatattcaacaacccaagaatatttataaggattgtctctcgttaaaccatgga
acgttagaaaaaatacctaaattggataatctaggaaaatctgataacacctaa
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