Ciona intestinalis (yellow sea squirt): 100187109
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Entry
100187109 CDS
T01056
Name
(RefSeq) glutamate receptor ionotropic, kainate 2-like
KO
K05203
glutamate receptor, ionotropic kainate 3
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04080
Neuroactive ligand-receptor interaction
cin04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
100187109
04082 Neuroactive ligand signaling
100187109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cin04040
]
100187109
Ion channels [BR:
cin04040
]
Ligand-gated channels
Glutamate (ionotropic)
100187109
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
CCDC22_CC
Motif
Other DBs
NCBI-GeneID:
100187109
NCBI-ProteinID:
XP_018667856
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All DBs
Position
6:complement(733071..743848)
Genome browser
AA seq
1013 aa
AA seq
DB search
MIPKPLPMFFLCLLLGQASSKIIIQTAVIYDDYYADSLPSFRKAIADTNLHVLHTEFYQN
NMTNIVETITAEKVSSLFILAKFINCTAMVELKQAVTVFFIGMVRQHCEPGDNFLMYMYP
SHFDVMGAMYDAIEQYRWKTAAVFYDESRELAFGYQDLDLARQRGINFKVWVIPEDQDKM
WGILKSVRLLGYRTYILACDYKIATSVLTKAVFLSMVSEVNHWMLPSIEMHPLLLQDFLE
SSVRLTVISAKIIRDVLERNYVYENSERHARDEVITAITTDAFNRIRRSCDEAIAIGCFD
IPLSEDSQCGIDQGAKSFSLGSYYSVGTCTEMYMRGLKEIGPTRIEFLEHHLENEKGTMS
LQGYWKDKSFEPGYIPFVQAAVVFPEDPLKVGIVYELPWVKWHVNELTSETTYEGFLIDL
LETLSRRLNFKYELYWNEKVGPNRGNEKEVDAEVNRLLETKQVEFVLYTRPILGGKLGKE
ELSIAFQQVSYYMVTLASGNDVPVNIWQFLAPFTFDSWFVLWASLIVVSIFLAVVNHFNP
FEWRKMALDDTNDDVGVEEFNRLGFGNSIWMAYGGLVHQGVDIEPRSYAGRMITGTWWYF
TMLVIAAYTANLTAFLTQEFSEEVASLSELLDQPHYDYGTTADAHIMTYFLPHAETHPFT
TVWQHLKTNPANVFNTTAEIFERISQGGFYYLAPFREVAKAEQQDCLYSRVGEGFWDYQY
ALPFQISSRYTAVFSDAIASLRDDGTLHELESKWFNFRTECTESSFDIESNRLGIGNLGG
MFILLVIGSFLSLMVHYGEVLWSRRRKLKYFRNKSEKKETKDDLVTEMRKKREQEKKELN
QQLEEWEGGYDYWVNRMDRINKTLETIDEQTKHHKRKITGRSESDSEDEDNQDFNWWTGA
YQNMTQAISGRAHKEAELQRDTVLAENPDETDIQTEDDVTISGLDNFSSICPPEFQDAPD
PQTETETKSTPMTSPAADVTVTSPAVEERRQQLGRLGRMLSFKEGRKNYDQWD
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgatacccaagccgctgcctatgtttttcttgtgtctactacttggccaagcaagcagc
aagatcattatacagacagcagtaatatacgatgactattacgctgattcattgccaagt
ttcagaaaagcgattgcagatacaaatctacatgtattacatacggagttttatcagaat
aatatgacaaatatagtagaaactatcacggccgaaaaagtatccagtcttttcatactt
gccaagttcataaattgtacagcgatggtggaactaaagcaagctgttactgtattcttt
attgggatggttcgacagcactgcgaaccgggcgacaattttctgatgtatatgtaccca
tcacacttcgacgttatgggagctatgtacgatgctatagaacagtatcgatggaaaact
gccgctgtattttacgatgaaagtcgagagttggctttcggatatcaagatttagattta
gcaagacagagaggaattaactttaaggtttgggtaataccagaagatcaagataaaatg
tggggaattctaaagtctgtacggttgctgggatacaggacttatattctggcatgcgat
tacaagattgctacttctgttttaacaaaagccgtgtttttgtcaatggttagcgaagtc
aatcattggatgttaccgagcattgagatgcacccgcttttgcttcaggattttctggaa
tcgagtgtcagactgaccgtgataagcgcgaaaataattcgcgacgttctcgaaaggaac
tatgtgtatgagaactctgaacgccatgcgagggacgaagttattactgcaatcacgaca
gatgctttcaaccggatccgtagatcgtgcgacgaagctattgctattggttgtttcgat
attccgttgtcggaggacagtcagtgcggaattgatcagggagcaaaaagtttctcactc
ggatcgtattactctgttggaacatgcactgaaatgtacatgcgaggcttgaaagaaatc
ggaccgacaagaatcgaatttttggagcaccatctcgagaatgaaaaaggcacaatgagc
ctgcaaggttattggaaagacaagtcattcgaaccaggttacattccatttgtacaagct
gcagttgtgtttcctgaagatccgttaaaagttggaatcgtatacgagctaccttgggtc
aaatggcacgtcaacgagctgacgtcagagactacgtatgaagggtttttaatcgatcta
ctggaaactttatctcggcgacttaactttaaatacgagttatattggaatgagaaagtt
gggcctaacagaggcaatgaaaaagaagtggacgcagaagtgaacagactgctagaaacc
aaacaggtggaatttgtcctttatactcgtcctattctcggtggcaaacttggtaaagaa
gaattatcaattgcatttcagcaagtgtcctactacatggtaacactcgcttctggaaac
gacgtaccagttaatatatggcagtttcttgcaccttttacgttcgattcttggtttgtg
ctatgggcatctttaatcgttgtgagtatattccttgctgttgtgaatcatttcaaccca
tttgagtggcgcaagatggcgctagacgacacgaatgatgacgtaggggtagaggaattt
aatagactagggttcggcaatagcatttggatggcatatggtggtcttgtacaccaaggt
gttgacatagaaccacgttcatatgcaggccgtatgatcactggaacgtggtggtatttc
actatgttagtaatagcagcatatactgctaacttaacagctttcttaactcaagagttt
tcggaggaagtagcgtcactgtcagagttattggatcaaccacactacgactatgggact
acagcagatgctcatattatgacgtattttctaccccatgctgaaacacatcccttcact
acagtatggcaacatctaaaaactaacccggcaaacgtgttcaatacaaccgctgaaata
tttgagagaatttcccaaggcgggttctactaccttgctcctttcagagaagtggcaaaa
gcagagcagcaagactgcttatattcaagggtgggcgaaggtttctgggattaccaatat
gctctaccgtttcaaatcagttctcgctacacagctgtattcagtgatgccattgcatcg
ttacgcgatgacggtacactacacgagttagaatcaaaatggtttaatttcaggaccgaa
tgcaccgaatcatctttcgatattgaatcaaaccgactcggaatcggtaatttgggagga
atgtttatcttacttgtgattggctcattcctatcgctgatggtgcattatggggaggtg
ctgtggtcgcgtcgtcggaaattaaaatacttccggaacaaaagcgagaagaaagagacg
aaagatgatctcgtgactgagatgaggaagaagagagagcaagagaagaaggagctaaat
cagcaactagaagagtgggagggagggtacgattactgggttaacaggatggaccgcatt
aataaaacattggagacaattgatgaacaaactaagcatcataagcgtaagatcactgga
agatctgagtccgattctgaagacgaagataaccaagactttaactggtggacaggtgcg
tatcaaaatatgactcaagccatatctggaagagctcataaagaagcagaactacaaaga
gacacagttttggcggaaaatcccgacgaaacggatatccaaacagaagatgacgtcacc
atttcaggtctggacaactttagttcaatatgccccccagagttccaggacgcccctgac
ccccaaactgaaaccgaaaccaaatcaacgcccatgacgtcaccggctgctgacgtaacc
gtgacgtcaccggctgtcgaggaacgacgacagcaactcggtcgcctcggaagaatgcta
agttttaaagaagggcgaaagaattacgaccaatgggactaa
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