Ciona intestinalis (yellow sea squirt): 100187129
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Entry
100187129 CDS
T01056
Name
(RefSeq) nuclear factor of activated T-cells 5
KO
K17335
nuclear factor of activated T-cells 5
Organism
cin
Ciona intestinalis (yellow sea squirt)
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cin03000
]
100187129
Transcription factors [BR:
cin03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) NF-AT
100187129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_dimer
RHD_DNA_bind
Motif
Other DBs
NCBI-GeneID:
100187129
NCBI-ProteinID:
XP_018666864
LinkDB
All DBs
Position
3:complement(2917127..2934936)
Genome browser
AA seq
1478 aa
AA seq
DB search
MSGQNNWNNSELQVEEISSGTRSSQETLCNPDNFAEDGSAQQASNTPAFQNGTNSNNLFG
STNNENTMSEVGETRQRKSSERQDSLNQLTLPLDFDTELLMDEDTQMFYEGSPAVESPRD
VTSPGEPGDVSSPYDGAMESDFDDSIFPGANANGRRAFPSWNTAMSRTTTGGSSDDDEYS
SCGSKKKRRRTRRDVPVLYSDRYYCGSQNSSQIPSPSPSGGNENEDLNMAAVPQILRNRQ
PANFSLSNNSDSSLYATIINANNRRMSNASESSQGGNFSRDGQMLPTESPASLSYSADTS
LNIADNEIVKKISTSRRRPTHHHHKNAVQDTDVPALNVNHPSSACGCSLSIVNQPEPQHR
ARYLTEGSRGPVKDSSQQGYPQIELKGYTGKTTLLVYVGSESDDKIRPHGFYQACKVTGR
NTTACEEVEVEGTKVIHIPFDAQEIISVDCVGILKLRNADVEARIGISRAKKRSQTVRLV
FRVILNDIERSDGCTPPLVLQVVSNRINCTQPLGQPEITKKSLDRCSVEGGVEMFIIGRN
FHRGIKVVFQDPEETDGSHWQTTGQLDKDTFNQSHMVVRVPAYHDPTITKPINVQVYVEH
NGRKCDPHSFTYDPLPPAIQPSTAENMSCETNIRGAADPVKAILEGKLDKKLLEALFARL
LTSTDVDTKDVKPLQKEKELAIGVTSAFNPIQPQANPAVLSQPLSFTTGVPVFGQVSKPV
PTQSVAGSAMHNQGLLKPNTFTLNHSLLTSVKPTPLFSNTNNSSFVTSQPLNNAGDQMKQ
TLFQNPENTQNFPSSTPGLGSFVIKTENPSSEPGFPNQPLQVSNTTYTPGNAATCGGMCQ
NYNPAVTMSTQTIAHSNVANSMIPQVNQDGAFFKLSSTTNTSAGQQNLWQQQTNTSIADE
ASNASTITTFTFPVVSTAPPLFTISLAQPLSFAQTTVVSGASLSYQQPGYTMNTMVTSAM
PAMHINVPPQSTWNPTQNVQSGAQINCNQHLLTTANTSSVINPVVAEQANQNNMFTQDQL
AQANTSVNSSILTQALMQQNVAIGGTQIVQQSAANMGNTFNNIQPNNSFTSQTIPQQTAT
ALNNSFNSNDNGYNNNSPSALVNSNPVAINQPQQNPTHSGVTSPFTHVNPGLNFGNDQNQ
QQVYTVSESLQILDQAKPSITANLDMRTSTPLQHQENYTGPILLSPTSVSGDESRNLPEA
LSSPIVSADTGLSIGFGTNLSLTEPVELNSSQNVPEVLQSIISDCTNPSVSSLDGDNATM
LHMIDQNSFPPASMFNNVTAAASNTQLPPSNNNQQQIQFQQPGVEMVQMMQTQAAPSPVP
FNEVQKDEPQHMSIGDLSTLITPEVMDTNIYLVNPMSIQPMQTSNQLVVGTAPATSTQIV
FSATTPTNPPPLYNEQHIQQDVSSQLNNPEIKSVPTYDTLDVNALSSDVENFVAHSQQQQ
QQQQQQQQQQQQQGFTDINSLSVTSADSTPQSNFYTIE
NT seq
4437 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtcaaaacaattggaataattctgaactacaagttgaggaaattagcagtggc
acacgttcatcacaagagacactttgcaacccagataactttgcagaagatggcagtgct
caacaagcatcaaacacaccagcattccaaaatgggaccaattccaacaatttgtttggg
agtacgaacaatgaaaataccatgtctgaagtgggcgagacaaggcaaaggaagtcttcc
gaacgacaggactccctgaatcagttgacgttacctctagattttgatacagagctgctc
atggatgaggacacacagatgttttatgaaggaagtcccgccgtagaaagtcctcgggat
gtaactagtcctggtgagccaggtgatgttagcagtccatacgatggagcaatggagtcc
gacttcgatgattctatttttcctggtgcgaatgcaaatggacgacgggctttcccatca
tggaacaccgccatgagcagaactaccacaggtggatcatctgatgatgatgaatattca
tcttgcgggagtaaaaagaagagacgcaggaccagacgggatgtcccggtcctgtattca
gatagatattattgtggatcacaaaacagctcgcaaattccctctccatctccctccgga
ggcaacgaaaacgaggatttaaacatggctgctgttccgcagatattgcgcaacagacag
ccagcgaatttttcgctcagtaacaattccgattcaagtttatatgccacgattattaat
gcgaataacaggaggatgtcaaatgcatcagaaagtagccaaggaggaaacttttcaagg
gatggtcagatgttgccaacggagagtcctgcaagtttatcctacagtgctgacacttca
ttaaacatagccgacaacgaaattgtaaaaaagatttcaacaagtcgacgtcggcccacg
catcaccaccataaaaacgcagtacaggacactgacgtgcctgctctcaatgttaaccac
ccttcatcagcatgtgggtgctcacttagcattgtaaatcaacctgaaccacagcaccga
gcacgctatctcacagagggaagccgtggtcctgtaaaggacagctcgcagcaaggctac
ccacaaattgaattgaagggatatacgggaaagaccactttactcgtttacgtaggatcc
gagtcggacgacaaaatccgtccacacggcttctaccaagcctgtaaagtgacgggcaga
aacacgaccgcttgtgaagaagtggaagttgaaggaacaaaagtcattcacattccattt
gatgcacaagaaataataagtgtggattgtgttggtatcttgaaactacgtaatgctgat
gttgaggcgcgtattgggatcagtcgcgcaaagaaaagaagtcaaaccgttcgtttggtt
ttccgagtaatcctaaacgacatagagcgtagtgatggctgcacgccaccccttgtttta
caagttgtttcaaaccgaatcaactgcactcagcctctcggccagccagaaattactaag
aaaagtttggaccgttgttcagtggaagggggcgtggaaatgtttattattggaagaaac
tttcaccgtggaataaaagttgttttccaagaccccgaagaaacggatggcagccattgg
caaaccaccggtcagttggataaagatactttcaatcagagtcacatggtagtgcgtgtg
cctgcctaccatgatcctaccatcacaaaacctattaatgttcaagtatatgttgaacac
aatggtaggaaatgtgatcctcacagtttcacatacgatcccctcccaccagctatacag
ccatctacagcagagaacatgtcctgtgaaacaaacatcagaggagcagctgatccagta
aaagctatccttgaaggaaagttggacaagaaattattggaagcactttttgctcgactt
ctaacttctactgatgttgatacgaaagatgtgaaacctttgcagaaggaaaaagaatta
gcaatcggagtaacttctgcattcaaccccatacaaccccaagccaacccagcagttcta
agccaaccattaagtttcacaacaggtgtcccagtgttcggtcaagtttcgaagccagtt
ccaacacagtcggttgccggctctgcaatgcataaccagggtttgctaaaaccgaacact
tttactctcaaccactcgcttctcaccagcgtgaagccaacccctttgttctccaacacc
aacaattcatcttttgtgacatcacaaccattgaataatgcaggggatcagatgaagcag
accttgttccaaaatccggaaaatacgcagaactttccaagttccactcccggactcggt
tcgtttgtaattaaaactgaaaacccaagttcggagcccggttttcccaaccaacccctg
caagtgtcaaacacaacgtacacacctggcaatgctgccacttgtggtggaatgtgtcag
aattataacccagccgttacaatgtcgacacaaacaatcgcgcacagcaacgtggctaac
tccatgatccctcaagtcaaccaagatggcgctttcttcaagctttcgagcactacgaat
acctctgctggccaacagaacctgtggcagcagcaaacaaacacttccattgctgatgaa
gcaagtaatgcctccaccatcaccacatttacgtttcctgtggtttccacagccccgcca
ctattcactatatcactagctcaaccgctgagctttgcccaaaccacagtagtgtcaggg
gcttcgttatcctaccaacaacccggctacaccatgaataccatggtcaccagtgcaatg
ccggcaatgcatataaatgtcccacctcaaagcacctggaaccccacacagaacgttcag
tctggtgcgcagataaactgcaatcaacacttgctgaccacagcaaatacatcatctgta
attaatcctgtagttgctgaacaagcaaaccagaacaacatgttcacccaggaccaatta
gcgcaagcgaatacatctgtaaactcttccattttaacacaagcccttatgcaacaaaat
gttgcaattgggggtacacagattgtgcagcaaagcgctgctaacatggggaatacattt
aacaacatacagcccaacaatagcttcacttcacaaacaataccacagcagactgccaca
gcactgaacaacagtttcaactcaaatgacaatggttacaacaataacagcccttccgcg
cttgtaaacagcaatccagttgccataaaccagccccagcaaaaccctacccacagcggt
gtaacttctccctttactcatgtaaacccaggcctaaatttcgggaacgatcaaaaccaa
cagcaagtttatacagtttccgagtctctgcagattttggatcaagccaagccctctatt
acagctaacctggacatgaggacaagtacgcctctacagcaccaggagaattacacagga
cctatactgttgagtccgaccagcgtttctggtgacgagtctcgtaacttacctgaagca
ttaagcagtcccattgtatcagcagacaccggtctttccataggtttcgggacaaattta
tcgcttaccgaacctgtggaactaaactcttcccagaacgtccccgaggtcctccagtct
attatctctgactgtacgaacccttccgtgtcttccctagatggtgacaatgctacaatg
ctgcatatgatagaccagaacagtttcccccctgcgagcatgtttaacaatgtaacagct
gcagcttctaatacccagttaccgccatcaaacaacaaccagcagcaaatacagttccag
cagccaggagtggagatggttcaaatgatgcagacgcaagcagctccttctcctgttcca
ttcaacgaagtacagaaggatgaaccacaacacatgagcattggtgatctgtctactcta
atcacaccagaggttatggacaccaacatatacttggtgaacccaatgtccatacaacca
atgcaaaccagcaatcaactggttgtaggtacagcacccgccacttccacacagatagtg
ttttctgcaacaactccaaccaaccccccacccttgtataatgagcaacacatacaacag
gatgtgtcttctcagctcaacaacccggaaattaagagtgtaccaacatatgacacactt
gatgtaaatgcattgtcaagcgatgttgaaaacttcgttgcccattcacaacaacagcag
caacaacagcagcaacaacagcaacaacaacagcaacagggttttactgatatcaacagt
ctttcagtgaccagtgctgacagtactccgcaaagtaatttctacactatagaataa
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integrated database retrieval system
