Ciona intestinalis (yellow sea squirt): 100187157
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Entry
100187157 CDS
T01056
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cin
Ciona intestinalis (yellow sea squirt)
Pathway
cin04137
Mitophagy - animal
cin04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100187157
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100187157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cin03019
]
100187157
03009 Ribosome biogenesis [BR:
cin03009
]
100187157
04131 Membrane trafficking [BR:
cin04131
]
100187157
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cin04147
]
100187157
Messenger RNA biogenesis [BR:
cin03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
100187157
Ribosome biogenesis [BR:
cin03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
100187157
Membrane trafficking [BR:
cin04131
]
SNARE
SNARE associated proteins
Others
100187157
Autophagy
Aggrephagy
Other aggrephagy associated proteins
100187157
Exosome [BR:
cin04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
100187157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_33
CDC48_2
AAA_5
AAA_2
AAA_22
TIP49
RNA_helicase
AAA_14
NPHP3_N
Vps4_C
nSTAND3
AAA_28
Parvo_NS1
Mg_chelatase
AAA_18
ATPase_2
AAA_17
IstB_IS21
AAA_7
DUF815
ABC_tran
NB-ARC
AAA_24
TsaE
Sigma54_activat
ResIII
NACHT
Viral_helicase1
SLFN-g3_helicase
AAA_lid_PRS2_C
KAP_NTPase
Motif
Other DBs
NCBI-GeneID:
100187157
NCBI-ProteinID:
XP_002121499
Ensembl:
ENSCING00000007091
LinkDB
All DBs
Position
5:2578503..2587020
Genome browser
AA seq
808 aa
AA seq
DB search
MAAKGGDKDDKDLATAILRTKSKPNRLIVEDAVVDDNSVVSLSPAKMEELQLFRADTVLL
KGKKRKETVCVALSDDTISNEKIRINRVVRNNLRVRIGDVVSIHSCPDVKYGVKIHVLPI
DDSIEGISGNLFEVYLKPYFLEAYRPVHKGDVLLIRGGMRAVEFKVVETDPSPFCVVSTD
TTIHYEGEAIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPQLFKAIGIKPPR
GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRRAFEEAEKNAPA
IIFIDELDAIAPKRDKTHGEVERRIVSQLLTLMDGLKQRAHVVVMAATNRPNSIDAALRR
FGRFDREVDIGIPDATGRLEILRIHTKNMKLGADVDLEQVAAESHGHVGADLAALCSEAA
LQQIRGKMDLIDLEDENIDAEVMNNLAVTMDDFRFAMSHSNPSALRETVVEVPNITWDDI
GGLDSVKTELQELVQYPVEHPEKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF
ISIKGPEMLTMWFGESEANVREVFDKARQAAPCVLFFDELDSIAKSRGGNVGDGGGAGDR
VINQILTEMDGMSSKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDEKSRIQILRA
NLRKSPVSKDVDLNLMAKVTKGFSGADLTEICQRACKLAIRESIEKDIQRERERTRNGES
NMDFDEDEEDLVPEIRRDHFEEAMRYARRSVTDKDIRKYEMFAQTLQQARGFGNFSFGRQ
AGPNAPSGGPAATGAGDLYEEEEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaaaggaggagacaaagacgataaagatctggcaactgcgattctcagaaca
aagagcaaaccgaatcgtttgattgtggaagatgctgtagttgatgataacagcgtggtc
tccttatcaccagcaaaaatggaggaactacagttgtttcgagccgacactgtgttgctg
aagggcaaaaagcgaaaagaaaccgtttgcgttgctctgtccgatgatacaatttcgaac
gagaaaatccgaattaaccgagtggttcgaaataacctgagagttcgaattggagatgtt
gtaagcatccattcgtgtccggatgttaagtacggagtgaagatccatgtcctccccatt
gatgacagcatagaaggaatctctggaaacttgtttgaggtttaccttaaaccttacttc
ctggaagcttacagaccggtgcacaaaggagatgttcttcttataagaggtggtatgaga
gctgtggagttcaaagtagtggaaacagatccaagtcctttctgtgtggtatcaaccgac
actactattcactatgagggagaagctatcaagagagaggatgaggaggaatctttaaat
gaggttggttatgatgacattggtggatgcaggaaacaacttgcacagatcaaggagatg
gtggaacttcctcttcgtcatccacaactgtttaaagctattggtatcaaaccaccaagg
ggtattctgttgtatggtccaccaggcacaggaaaaactctgatcgctcgtgctgttgca
aatgaaactggtgctttcttctttcttatcaatggtccggagatcatgagtaagttggct
ggtgagtcggagtccaacctccgaagagcatttgaagaggcggagaagaacgctcctgct
attatcttcattgatgaactggatgctattgctcccaaacgagacaaaactcatggcgaa
gtggaacgtcgaattgtttctcaacttctaactttgatggatggtttgaaacagcgcgct
catgtggtcgttatggctgcaaccaatcgcccgaactccatcgatgcggctcttcgtcgt
ttcggaagatttgatcgggaagtggacatcgggattccggatgcaactggaagacttgag
atcctccgcatccatactaagaacatgaaactcggagctgatgtagatcttgaacaggtt
gctgcggaatctcatggtcacgtaggagctgatctcgctgctctttgttcggaggctgcc
ctccagcagatccgtggaaagatggacctcattgatcttgaggatgagaatattgatgcg
gaagtgatgaacaacctcgctgttaccatggatgactttaggtttgcgatgtcgcatagc
aatccatcagcactccgtgaaacagtggttgaggtgcccaacattacatgggatgacatt
ggtggtcttgatagtgtaaaaactgaacttcaagaacttgttcagtaccctgttgagcat
ccagagaagttccttaagtttggtatgacaccatccaagggtgtgttgttctatgggcca
ccaggttgtggtaaaaccctccttgccaaagctattgccaacgagtgtcaagctaatttc
atctccatcaagggtcccgagatgttgaccatgtggtttggtgaatcagaggctaatgtc
cgagaagtttttgataaggcgagacaagctgctccttgtgtcttattctttgacgagttg
gactcgatcgcgaaatcccgaggaggaaatgttggagacggaggaggagcaggagatcgg
gtcatcaaccagatcctcactgagatggatgggatgtcaagcaagaagaatgtgtttatt
attggagcaaccaatcgacccgacatcattgattctgccatcctccgacctggtcgtctt
gatcaactcatctacatcccactcccagatgagaagtctcgcattcagatccttagagct
aatctcagaaaatctcctgtttccaaggatgttgaccttaatctgatggcgaaagtcaca
aaaggcttcagtggagctgatctcactgagatctgccaacgtgcatgtaagttggccatc
cgtgaaagcattgagaaagacattcaacgtgagagggaacgtacaagaaacggagaaagc
aatatggactttgatgaggatgaagaagatttggttccagagatccgacgtgatcatttt
gaggaagcgatgcgttatgctcgacgatcagtgaccgacaaggacatcaggaagtacgag
atgtttgcacaaacattacaacaagcacgtggtttcggaaacttcagttttggtcgtcaa
gctggaccaaatgctccatccggtggcccagctgctacaggagcaggggacctctatgag
gaggaagaagatgacctttacagctga
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